RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HTR3CQ8WXA8 447 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ZBTB10Q96DT7 871 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 PNPLA3Q9NST1 481 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 H2AFY2Q9P0M6 372 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ZC3H4Q9UPT8 1303 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP4A22Q5TCH4 519 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 LMBRD2Q68DH5 695 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DHDDSQ86SQ9 333 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 EXOC3L1Q86VI1 746 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF670Q9BS34 389 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM134Q9H6X4 195 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 DNAJC18Q9H819 358 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM161AQ9NX61 479 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 NINJ2Q9NZG7 142 aa10.55□□□□□ -0.72
CCDC88A-202ENST00000336838 OPLAHO14841 1288 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CNOT3O75175 753 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 DRD4P21917 467 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP2F1P24903 491 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CNTN1Q12860 1018 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC15A2Q16348 729 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 C12orf50Q8NA57 414 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ATG4AQ8WYN0 398 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 BAP1Q92560 729 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 REPS1Q96D71 796 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 AGBL1Q96MI9 1066 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 RGPD1P0DJD0 1748 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PHRF1Q9P1Y6 1649 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SF3B1O75533 1304 aaKnown RBP eCLIP10.54□□□□□ -0.721e-6■■■■■ 114.6
CCDC88A-202ENST00000336838 MYO1GB0I1T2 1018 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ITGB3P05106 788 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM153BP0C7A2 387 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TSNQ15631 228 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM153CQ494X1 144 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TJAP1Q5JTD0 557 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 DENND5BQ6ZUT9 1274 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PABPC5Q96DU9 382 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CAP2P40123 477 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CD151P48509 253 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC18A1P54219 525 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ARHGEF7Q14155 803 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SQLEQ14534 574 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 DDR2Q16832 855 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SPANXN2Q5MJ10 180 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 AGAP3Q96P47 875 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CIDEBQ9UHD4 219 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 LDLRP01130 860 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PGK2P07205 417 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TALDO1P37837 337 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 OTOP1Q7RTM1 612 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PHF13Q86YI8 300 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SLIT2O94813 1529 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 H3BMM5 538 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 C21orf2O43822 256 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 DNAJA2O60884 412 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PDE9AO76083 593 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ST13P50502 369 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 RPL14P50914 215 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 N4BP2L1Q5TBK1 243 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TRMOQ9BU70 441 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 FBXO44Q9H4M3 255 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PXMP2Q9NR77 195 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 MCM8Q9UJA3 840 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PLA2G6O60733 806 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ITGA4P13612 1032 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 BGNP21810 368 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 HADHBP55084 474 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ADHFE1Q8IWW8 467 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 USE1Q9NZ43 259 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 FNDC3AQ9Y2H6 1198 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 RECQL5O94762 991 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 RARAP10276 462 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 ELK3P41970 407 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC11A2P49281 568 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP51A1Q16850 503 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PLEKHM3Q6ZWE6 761 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 BRSK2Q8IWQ3 736 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TAS1R2Q8TE23 839 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 PPP1R10Q96QC0 940 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 GAKO14976 1311 aa10.54□□□□□ -0.72
CCDC88A-202ENST00000336838 TK2O00142 265 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ASNA1O43681 348 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 GLP2RO95838 553 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 EPHB2P29323 1055 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 INSCQ1MX18 579 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KCNMB4Q86W47 210 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 EPS8L1Q8TE68 723 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 INPP4AQ96PE3 977 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 BLOC1S4Q9NUP1 217 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ZSCAN9O15535 394 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RHOBTB1O94844 696 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 AUHQ13825 339 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 NFE2Q16621 373 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PIWIL4Q7Z3Z4 852 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 SZRD1Q7Z422 152 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF606Q8WXB4 792 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 SH3KBP1Q96B97 665 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PTCD3Q96EY7 689 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 HOXA2O43364 376 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 FECHP22830 423 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms