RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 PSIP1O75475 530 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SNAPC5O75971 98 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 WFS1O76024 890 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MPOP05164 745 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM253P0C7T8 217 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MSL3P1P0C860 447 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NCOA4Q13772 614 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PERM1Q5SV97 790 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TTC23Q5W5X9 447 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 RIPOR1Q6ZS17 1223 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 OR52L1Q8NGH7 329 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC7A14Q8TBB6 771 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ERMAPQ96PL5 475 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TTYH1Q9H313 450 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF302Q9NR11 478 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CRLS1Q9UJA2 301 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PADI4Q9UM07 663 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ABCG2Q9UNQ0 655 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NCAM1P13591 858 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SCNN1DP51172 638 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MSLNQ13421 630 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FAM98CQ17RN3 349 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SWT1Q5T5J6 900 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 C1orf189Q5VU69 101 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TXNDC11Q6PKC3 985 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 METTL16Q86W50 562 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC26A11Q86WA9 606 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SEPHS2Q99611 448 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 KATNAL1Q9BW62 490 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GPR63Q9BZJ6 419 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 LEMD3Q9Y2U8 911 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CDK12Q9NYV4 1490 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FCHO1O14526 889 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TRAPPC3O43617 180 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 APBA3O96018 575 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PRR29P0C7W0 189 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MCL1Q07820 350 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ERMARDQ5T6L9 678 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ARMC6Q6NXE6 501 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 KYAT3Q6YP21 454 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ELOA2Q8IYF1 753 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 DENND6BQ8NEG7 585 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PABPC5Q96DU9 382 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 VMP1Q96GC9 406 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FRMD6Q96NE9 622 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 AP1S3Q96PC3 154 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM165Q9HC07 324 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 POLD4Q9HCU8 107 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 AHSPQ9NZD4 102 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CNOT7Q9UIV1 285 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CROTQ9UKG9 612 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SPEF1Q9Y4P9 236 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 HECW2Q9P2P5 1572 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PTPRTO14522 1441 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CCNE2O96020 404 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 RARBP10826 455 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC2A3P11169 496 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ACAT1P24752 427 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MYL9P24844 172 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ALDH1A3P47895 512 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CDK7P50613 346 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NRG3P56975 720 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 EIF4A1P60842 406 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PDIA5Q14554 519 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM132DQ14C87 1099 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC45A4Q5BKX6 768 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 BHLHB9Q6PI77 547 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MEIOBQ8N635 442 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ANKS1AQ92625 1134 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 BHMTQ93088 406 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 TPD52L3Q96J77 140 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 YME1L1Q96TA2 773 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CELF4Q9BZC1 486 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 FAM49AQ9H0Q0 323 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 COPS7BQ9H9Q2 264 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GIN1Q9NXP7 522 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLAIN2Q9P270 581 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CLRN2A0PK11 232 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 THRBP10828 461 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NEK3P51956 506 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NME5P56597 212 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PSMC5P62195 406 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CAMK2GQ13555 558 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 VPS72Q15906 364 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CWF19L1Q69YN2 538 aaKnown RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 NECAB2Q7Z6G3 386 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 SLC38A2Q96QD8 506 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 EPB41L1Q9H4G0 881 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 MIEF1Q9NQG6 463 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ZSWIM5Q9P217 1185 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 PI4KBQ9UBF8 816 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 CHORDC1Q9UHD1 332 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 GYPCP04921 128 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 HOXC8P31273 242 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 DLG1Q12959 904 aa6.32□□□□□ -1.4
CSMD1-201ENST00000335551 ZC2HC1CQ53FD0 456 aaPredicted RBP6.32□□□□□ -1.4
CSMD1-201ENST00000335551 RBM44Q6ZP01 1051 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms