RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RRN3Q9NYV6 651 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 KIDINS220Q9ULH0 1771 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SALL1Q9NSC2 1324 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 DYTNA2CJ06 578 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SLC2A3P11169 496 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SPANXN3Q5MJ09 141 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SPANXN2Q5MJ10 180 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 STK32CQ86UX6 486 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FAM81AQ8TBF8 368 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 UBQLN1Q9UMX0 589 aaKnown RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FAM25AB3EWG3 89 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FAM25CB3EWG5 89 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 FAM25GB3EWG6 89 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 ANPEPP15144 967 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 MAPK10P53779 464 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 NAB1Q13506 487 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 WDR49Q8IV35 697 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 SLC35C1Q96A29 364 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 ZFP42Q96MM3 310 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 RNF145Q96MT1 663 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 GORASP1Q9BQQ3 440 aa17.77■□□□□ 0.44
SYNPO-201ENST00000307662 AVENQ9NQS1 362 aaPredicted RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 COL3A1P02461 1466 aaPredicted RBP17.77■□□□□ 0.44
SYNPO-201ENST00000307662 A0A096LPK6 155 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 NR1H2P55055 460 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 CSE1LP55060 971 aaKnown RBP17.77■□□□□ 0.43
SYNPO-201ENST00000307662 EARS2Q5JPH6 523 aaKnown RBP17.77■□□□□ 0.43
SYNPO-201ENST00000307662 SH3RF1Q7Z6J0 888 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 DHDDSQ86SQ9 333 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 MYO1HQ8N1T3 1032 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 ATP6V0D2Q8N8Y2 350 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 TSPAN14Q8NG11 270 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 SLC25A23Q9BV35 468 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 UGT2B28Q9BY64 529 aa17.77■□□□□ 0.43
SYNPO-201ENST00000307662 PRG3Q9Y2Y8 225 aaPredicted RBP17.77■□□□□ 0.43
SYNPO-201ENST00000307662 AK9Q5TCS8 1911 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 MFSD7Q6UXD7 560 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 SPRTNQ9H040 489 aaPredicted RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 PLGRKTQ9HBL7 147 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ERAP1Q9NZ08 941 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 HS6ST1O60243 411 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 TADA2AO75478 443 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ZBTB7AO95365 584 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 NUDT17P0C025 328 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 DDX39BQ13838 428 aaKnown RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 NOTUMQ6P988 496 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 PNMA5Q96PV4 448 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 NUDT12Q9BQG2 462 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 KRCC1Q9NPI7 259 aaPredicted RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM191CA6NGB0 347 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 WFS1O76024 890 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 CPSF4O95639 269 aaKnown RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 KLRK1P26718 216 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 CD151P48509 253 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM62Q0P6H9 643 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ISLR2Q6UXK2 745 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ARP10275 920 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 MAPTP10636 758 aaKnown RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 RAP1GAPP47736 663 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 NRF1Q16656 503 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM119Q4V9L6 283 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 MPZL3Q6UWV2 235 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 MICALL2Q8IY33 904 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM176AQ96HP8 235 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 PCYOX1Q9UHG3 505 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 DUSP12Q9UNI6 340 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 SPATA31A5Q5VU36 1347 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 SPATA31A7Q8IWB4 1347 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 JCHAINP01591 159 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ALOX15P16050 662 aaPredicted RBP17.76■□□□□ 0.43
SYNPO-201ENST00000307662 PIK3R1P27986 724 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 CRABP2P29373 138 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 BCAT1P54687 386 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 PKNOX1P55347 436 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 KCNMB4Q86W47 210 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 ENKURQ8TC29 256 aa17.76■□□□□ 0.43
SYNPO-201ENST00000307662 SLIT1O75093 1534 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 NCAM2O15394 837 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 ETS1P14921 441 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 ANXA11P50995 505 aaKnown RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 NR6A1Q15406 480 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 CAMK1DQ8IU85 385 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PHF21BQ96EK2 531 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 HDHD2Q9H0R4 259 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 WDR41Q9HAD4 459 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 ITSN1Q15811 1721 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PDE9AO76083 593 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 GLP2RO95838 553 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 COX10Q12887 443 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 ARMC3Q5W041 872 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 FAM131BQ86XD5 332 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 UTP15Q8TED0 518 aaKnown RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 ZNF512Q96ME7 567 aaPredicted RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 OLFM1Q99784 485 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 OSBPL10Q9BXB5 764 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PRRG3Q9BZD7 231 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 CLIC5Q9NZA1 410 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 SPATA2Q9UM82 520 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 FAM237BA0A1B0GVD1 139 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PTGES3LE9PB15 166 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms