RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ABLIM1O14639 778 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 SPTLC1O15269 473 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 TLR5O60602 858 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 XYLBO75191 536 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 CXCL14O95715 111 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 TAF10Q12962 218 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 TFAP2DQ7Z6R9 452 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 TRIM42Q8IWZ5 723 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 YAF2Q8IY57 180 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 AFAP1L2Q8N4X5 818 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 OR6P1Q8NGX9 317 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 DNMT3LQ9UJW3 386 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 FARP1Q9Y4F1 1045 aaPredicted RBP11.96□□□□□ -0.5
VPS4A-201ENST00000254950 C9IYK1 514 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 FGF10O15520 208 aaPredicted RBP11.96□□□□□ -0.5
VPS4A-201ENST00000254950 OPHN1O60890 802 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 RAMP2O60895 175 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 CAPN15O75808 1086 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 BRAFP15056 766 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 RBL1P28749 1068 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 PBX3P40426 434 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 KPNA2P52292 529 aaKnown RBP11.96□□□□□ -0.5
VPS4A-201ENST00000254950 GEMP55040 296 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 UPP1Q16831 310 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 LINC00523Q86TU6 105 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 CNPY4Q8N129 248 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 PPHLN1Q8NEY8 458 aaKnown RBP11.96□□□□□ -0.5
VPS4A-201ENST00000254950 GPR152Q8TDT2 470 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 BHMTQ93088 406 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 MIOSQ9NXC5 875 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 SENP1Q9P0U3 644 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 VANGL2Q9ULK5 521 aa11.96□□□□□ -0.5
VPS4A-201ENST00000254950 HCRTO43612 131 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 RHOCP08134 193 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 NDUFV1P49821 464 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 DRG2P55039 364 aaKnown RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 SLC45A4Q5BKX6 768 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 MAP3K21Q5TCX8 1036 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 NIPA2Q8N8Q9 360 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 ADAM21Q9UKJ8 722 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 AAR2Q9Y312 384 aaKnown RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 KCNK1O00180 336 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 TULP2O00295 520 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 COPEO14579 308 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PMPCBO75439 489 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 AGTP01019 485 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 GOT1P17174 413 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PPARGP37231 505 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 CCT5P48643 541 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 SLC11A1P49279 550 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PPP2R2AP63151 447 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PCSK7Q16549 785 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 GKAP1Q5VSY0 366 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PSTKQ8IV42 348 aaKnown RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 COLGALT1Q8NBJ5 622 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 DQX1Q8TE96 717 aaKnown RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PPP4R1Q8TF05 950 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 STAMBPL1Q96FJ0 436 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PDE4DIPQ5VU43 2346 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 MDM4O15151 490 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PFKMP08237 780 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 ERCC2P18074 760 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 OXCT1P55809 520 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 TAF1BQ53T94 588 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 PSRC1Q6PGN9 363 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 RFX8Q6ZV50 586 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 ZNF280BQ86YH2 543 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 LGI2Q8N0V4 545 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 FBXO22Q8NEZ5 403 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 DDI1Q8WTU0 396 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 C2orf15Q8WU43 125 aaKnown RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 NAT9Q9BTE0 207 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 RCOR3Q9P2K3 495 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-201ENST00000254950 MID2Q9UJV3 735 aa11.95□□□□□ -0.5
VPS4A-201ENST00000254950 A0A1W2PQH9 124 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 RNF103O00237 685 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 ITGAVP06756 1048 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 HSPA9P38646 679 aaKnown RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CDKN2BP42772 138 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 PAPOLAP51003 745 aaKnown RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 FPGSQ05932 587 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 SF3A3Q12874 501 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 TCEAL1Q15170 157 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 LONRF1Q17RB8 773 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 NPNTQ6UXI9 565 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CACNA2D3Q8IZS8 1091 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 KCTD13Q8WZ19 329 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CDC42EP4Q9H3Q1 356 aaKnown RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 RBM22Q9NW64 420 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 GMIPQ9P107 970 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 SFMBT1Q9UHJ3 866 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 TRHDEQ9UKU6 1024 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 YJEFN3A6XGL0 299 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 E7ENQ6 273 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CRCPO75575 148 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 POLBP06746 335 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 OR1E1P30953 314 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 PEX5P50542 639 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 PRSS55Q6UWB4 352 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 VAT1Q99536 393 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms