RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CYP2R1Q6VVX0 501 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 UCMAQ8WVF2 138 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 CLEC4DQ8WXI8 215 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 IFT43Q96FT9 208 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 VPS33BQ9H267 617 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 EML4Q9HC35 981 aaKnown RBP4.74□□□□□ -1.65
VPS13C-201ENST00000249837 AAASQ9NRG9 546 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SETD4Q9NVD3 440 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 BARX2Q9UMQ3 279 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SUPT3HB4E1H0 165 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 E7ENQ6 273 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 ATP4AP20648 1035 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 NRLP54845 237 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 USP4Q13107 963 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PDK3Q15120 406 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SV2CQ496J9 727 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 ZPBP2Q6X784 338 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 RINLQ6ZS11 566 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 AGBL3Q8NEM8 1001 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SLC2A14Q8TDB8 520 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 RNF157Q96PX1 679 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SIKE1Q9BRV8 207 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 HES2Q9Y543 173 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 APOC4-APOC2K7ER74 178 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PFDN6O15212 129 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 APOC2P02655 101 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 YBX3P16989 372 aaKnown RBP eCLIP4.74□□□□□ -1.656e-6■■■□□ 15.3
VPS13C-201ENST00000249837 GSTT1P30711 240 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SLC6A3Q01959 620 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 ZNF772Q68DY9 489 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-201ENST00000249837 CMC1Q7Z7K0 106 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PHACTR1Q9C0D0 580 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 CCDC134Q9H6E4 229 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 NDUFA13Q9P0J0 144 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SPATA31C2B4DYI2 1134 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PEX1O43933 1283 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 INSRRP14616 1297 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SERPINB8P50452 374 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 SPRED3Q2MJR0 410 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 MSS51Q4VC12 460 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PPM1JQ5JR12 505 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 C6orf10Q5SRN2 563 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 HTR3CQ8WXA8 447 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 NT5MQ9NPB1 228 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 NDFIP2Q9NV92 336 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 ZNF212Q9UDV6 495 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TCRBV7S3A2A0A539 114 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TPP1O14773 563 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TIMM44O43615 452 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 WFS1O76024 890 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 PSME3P61289 254 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 BLMHQ13867 455 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 CAPRIN1Q14444 709 aaKnown RBP4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TAF5Q15542 800 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 CYP1B1Q16678 543 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TXNRD3NBQ6F5E7 133 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 ULK2Q8IYT8 1036 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 NDRG1Q92597 394 aaKnown RBP4.74□□□□□ -1.65
VPS13C-201ENST00000249837 MRIQ9BWK5 157 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 GRIP2Q9C0E4 1043 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 TCF7L2Q9NQB0 619 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 FAM8A1Q9UBU6 413 aa4.74□□□□□ -1.65
VPS13C-201ENST00000249837 UGT1A9O60656 530 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 GP5P40197 560 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 NAGLUP54802 743 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ANO4Q32M45 955 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 TNS4Q8IZW8 715 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 RBM15BQ8NDT2 890 aaKnown RBP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 C10orf82Q8WW14 230 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 LGMNQ99538 433 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 CADM1Q9BY67 442 aaKnown RBP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 UGT1A7Q9HAW7 530 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 UGT1A10Q9HAW8 530 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 UGT1A8Q9HAW9 530 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 RBM22Q9NW64 420 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 TJP2Q9UDY2 1190 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 BNIP3LO60238 219 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 CST3P01034 146 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 CCDC15Q0P6D6 951 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 PEX6Q13608 980 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ZNF235Q14590 738 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 IMPG1Q17R60 797 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 KIAA1841Q6NSI8 718 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 NOTUMQ6P988 496 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 LPCAT2Q7L5N7 544 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ZNF398Q8TD17 642 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ATXN3LQ9H3M9 355 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 PIF1Q9H611 641 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ADGRA3Q8IWK6 1321 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ADGRA2Q96PE1 1338 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 MYCP01106 439 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 RAG1P15918 1043 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 FGFR3P22607 806 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 MAPK10P53779 464 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 PRKAA1Q13131 559 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 C1orf220Q5T0J3 134 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 FKBP1CQ5VVH2 108 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 ABHD15Q6UXT9 468 aa4.73□□□□□ -1.65
VPS13C-201ENST00000249837 PTAR1Q7Z6K3 402 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-201ENST00000249837 SIAH1Q8IUQ4 282 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms