RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TCP10LQ8TDR4 215 aa11□□□□□ -0.65
CUX1-221ENST00000622516 DENND1AQ8TEH3 1009 aa11□□□□□ -0.65
CUX1-221ENST00000622516 HSFY1Q96LI6 401 aa11□□□□□ -0.65
CUX1-221ENST00000622516 ZC3H7BQ9UGR2 993 aaKnown RBP11□□□□□ -0.65
CUX1-221ENST00000622516 GGA2Q9UJY4 613 aa11□□□□□ -0.65
CUX1-221ENST00000622516 MAGED2Q9UNF1 606 aaPredicted RBP11□□□□□ -0.65
CUX1-221ENST00000622516 TYROBPO43914 113 aa11□□□□□ -0.65
CUX1-221ENST00000622516 B3GAT3O94766 335 aa11□□□□□ -0.65
CUX1-221ENST00000622516 FSBPO95073 299 aa11□□□□□ -0.65
CUX1-221ENST00000622516 FYNP06241 537 aa11□□□□□ -0.65
CUX1-221ENST00000622516 ELNP15502 786 aa11□□□□□ -0.65
CUX1-221ENST00000622516 WARSP23381 471 aaKnown RBP11□□□□□ -0.65
CUX1-221ENST00000622516 YY1P25490 414 aa11□□□□□ -0.65
CUX1-221ENST00000622516 BRCC3P46736 316 aa11□□□□□ -0.65
CUX1-221ENST00000622516 MGAT5Q09328 741 aa11□□□□□ -0.65
CUX1-221ENST00000622516 PTK7Q13308 1070 aa11□□□□□ -0.65
CUX1-221ENST00000622516 EFHC1Q5JVL4 640 aa11□□□□□ -0.65
CUX1-221ENST00000622516 TRMT10BQ6PF06 316 aaKnown RBP11□□□□□ -0.65
CUX1-221ENST00000622516 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SPATA21Q7Z572 469 aa11□□□□□ -0.65
CUX1-221ENST00000622516 TOP6BLQ8N6T0 577 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SERAC1Q96JX3 654 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SMOQ99835 787 aa11□□□□□ -0.65
CUX1-221ENST00000622516 MTG1Q9BT17 334 aaPredicted RBP11□□□□□ -0.65
CUX1-221ENST00000622516 KLC2Q9H0B6 622 aa11□□□□□ -0.65
CUX1-221ENST00000622516 FAM124BQ9H5Z6 455 aaPredicted RBP11□□□□□ -0.65
CUX1-221ENST00000622516 PLAC1Q9HBJ0 212 aa11□□□□□ -0.65
CUX1-221ENST00000622516 IL1RAPL1Q9NZN1 696 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SLC17A6Q9P2U8 582 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SLC24A2Q9UI40 661 aa11□□□□□ -0.65
CUX1-221ENST00000622516 IKBKGQ9Y6K9 419 aa11□□□□□ -0.65
CUX1-221ENST00000622516 PDCD11Q14690 1871 aaKnown RBP11□□□□□ -0.65
CUX1-221ENST00000622516 BCLAF3A2AJT9 711 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 UBOX5O94941 541 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 FAM200BP0CF97 657 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 NCAM1P13591 858 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ARL4AP40617 200 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ACADSBP45954 432 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 BMPR2Q13873 1038 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 TIGD5Q53EQ6 642 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SLC45A4Q5BKX6 768 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 HHATQ5VTY9 493 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 HEATR6Q6AI08 1181 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 LIMS2Q7Z4I7 341 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ZMIZ2Q8NF64 920 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 CYTH2Q99418 400 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SYT15Q9BQS2 421 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ARHGEF4Q9NR80 690 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 TRMT13Q9NUP7 481 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 FZD10Q9ULW2 581 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ABT1Q9ULW3 272 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ACTL7BQ9Y614 415 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ATXN2Q99700 1313 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 KCNK1O00180 336 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 GABRDO14764 452 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 CHADO15335 359 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ASGR1P07306 291 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 CCND3P30281 292 aaPredicted RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 LRPAP1P30533 357 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 HOXC8P31273 242 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 PRKCZQ05513 592 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 DEUP1Q05D60 604 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SPARCL1Q14515 664 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 VPS52Q8N1B4 723 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 FITM2Q8N6M3 262 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
CUX1-221ENST00000622516 STKLD1Q8NE28 680 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 DEPDC1BQ8WUY9 529 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SOCS4Q8WXH5 440 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SGSM3Q96HU1 749 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 TMEM209Q96SK2 561 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 SMYD2Q9NRG4 433 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 PADI3Q9ULW8 664 aa10.99□□□□□ -0.65
CUX1-221ENST00000622516 ITGB1P05556 798 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 INHBAP08476 426 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 F7P08709 466 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 PYGBP11216 843 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ATP2A2P16615 1042 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 GBP2P32456 591 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 RPL34P49207 117 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 OVGP1Q12889 678 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 NR1H3Q13133 447 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ITIH4Q14624 930 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 SEPT7Q16181 437 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 KLHL38Q2WGJ6 581 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 CASC4Q6P4E1 433 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 MZB1Q8WU39 189 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 NCAPGQ9BPX3 1015 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 SENP6Q9GZR1 1112 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 PHTF1Q9UMS5 762 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 SUN1O94901 812 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 OAS1P00973 400 aaKnown RBP10.98□□□□□ -0.65
CUX1-221ENST00000622516 MT-ND3P03897 115 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 CYBAP13498 195 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 BDNFP23560 247 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 KCNA10Q16322 511 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 ZNF534Q76KX8 674 aa10.98□□□□□ -0.65
CUX1-221ENST00000622516 RNF139Q8WU17 664 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms