RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FNIP1Q8TF40 1166 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 WBP2Q969T9 261 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 PLD4Q96BZ4 506 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 SLC39A13Q96H72 371 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 CFAP57Q96MR6 1250 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 TBCBQ99426 244 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 KXD1Q9BQD3 176 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 NUP85Q9BW27 656 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 TRIM7Q9C029 511 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 LUC7LQ9NQ29 371 aaKnown RBP20.54■□□□□ 0.88
UPF3A-211ENST00000618700 CFAP97Q9P2B7 532 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 UVRAGQ9P2Y5 699 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 LIMD1Q9UGP4 676 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 ENDOD1O94919 500 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 SDC4P31431 198 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 SULT1E1P49888 294 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 KPNA1P52294 538 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-211ENST00000618700 ZNF143P52747 638 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-211ENST00000618700 RING1Q06587 406 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 ZNF252P-AS1Q0IIN9 211 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 FCHO2Q0JRZ9 810 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 MFSD6LQ8IWD5 586 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 BPIFB1Q8TDL5 484 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 DEPDC1BQ8WUY9 529 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 RFFLQ8WZ73 363 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 CENPIQ92674 756 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-211ENST00000618700 DESI2Q9BSY9 194 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 CNPY3Q9BT09 278 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 RPP25Q9BUL9 199 aaKnown RBP20.53■□□□□ 0.88
UPF3A-211ENST00000618700 PLA2G2FQ9BZM2 168 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 FAM204AQ9H8W3 233 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 KCNK12Q9HB15 430 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 DDIT4Q9NX09 232 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 IGSF9Q9P2J2 1179 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 TLR6Q9Y2C9 796 aa20.53■□□□□ 0.88
UPF3A-211ENST00000618700 E2F8A0AVK6 867 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 M0QYT0 321 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 NRDCO43847 1150 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 IRF1P10914 325 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 VAV2P52735 878 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 TBX4P57082 545 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 TCEAL1Q15170 157 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 C15orf59Q2T9L4 293 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-211ENST00000618700 Q6ZNB5 142 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 RSAD2Q8WXG1 361 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 FCRL2Q96LA5 508 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-211ENST00000618700 UHRF1Q96T88 793 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-211ENST00000618700 KCNF1Q9H3M0 494 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 PIGVQ9NUD9 493 aa20.52■□□□□ 0.88
UPF3A-211ENST00000618700 RCCD1A6NED2 376 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 CCP110O43303 1012 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 MTA2O94776 668 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 HMBSP08397 361 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 RDXP35241 583 aaKnown RBP20.51■□□□□ 0.87
UPF3A-211ENST00000618700 KRT83P78385 493 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 ATP11AP98196 1134 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 HTR3DQ70Z44 454 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 STRADAQ7RTN6 431 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 RHOT2Q8IXI1 618 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 ZNF564Q8TBZ8 553 aaPredicted RBP20.51■□□□□ 0.87
UPF3A-211ENST00000618700 TMEM51Q9NW97 253 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 CTTNBP2NLQ9P2B4 639 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 ANAPC7Q9UJX3 599 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 TFR2Q9UP52 801 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 ADGRG1Q9Y653 693 aa20.51■□□□□ 0.87
UPF3A-211ENST00000618700 A0A0A6YYK5 440 aaPredicted RBP20.5■□□□□ 0.87
UPF3A-211ENST00000618700 PJA2O43164 708 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 F9P00740 461 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 KLKB1P03952 638 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 ASGR2P07307 311 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 PSMC3P17980 439 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 CORO1AP31146 461 aaKnown RBP20.5■□□□□ 0.87
UPF3A-211ENST00000618700 GBP1P32455 592 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 HDAC4P56524 1084 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 DEUP1Q05D60 604 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 NME3Q13232 169 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 SH3PXD2AQ5TCZ1 1133 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 SLC35G2Q8TBE7 412 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 ASIC4Q96FT7 647 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 NECAB3Q96P71 396 aaPredicted RBP20.5■□□□□ 0.87
UPF3A-211ENST00000618700 OSGEPQ9NPF4 335 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 RYDENQ9NUL5 291 aaKnown RBP20.5■□□□□ 0.87
UPF3A-211ENST00000618700 SH3BP1Q9Y3L3 701 aa20.5■□□□□ 0.87
UPF3A-211ENST00000618700 SYNJ2BP-COX16A0A087WUM0 186 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 BTNL10A8MVZ5 291 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 PSMA2P25787 234 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 CXCR3P49682 368 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 ATXN1P54253 815 aaKnown RBP20.49■□□□□ 0.87
UPF3A-211ENST00000618700 HADHBP55084 474 aaKnown RBP20.49■□□□□ 0.87
UPF3A-211ENST00000618700 GRM2Q14416 872 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 PPP2R5DQ14738 602 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 CDO1Q16878 200 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 RAB6CQ53S08 254 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 ZC3H12AQ5D1E8 599 aaKnown RBP20.49■□□□□ 0.87
UPF3A-211ENST00000618700 NUGGCQ68CJ6 796 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 SLC44A3Q8N4M1 653 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 NIPA2Q8N8Q9 360 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 TTC16Q8NEE8 873 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 FAM172AQ8WUF8 416 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 DCLK3Q9C098 648 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms