RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TBX18O95935 607 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 SPATA31D3P0C874 917 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 CSH1P0DML2 217 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 CSH2P0DML3 217 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 ALDH1A3P47895 512 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 TWF1Q12792 350 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 SLC9A4Q6AI14 798 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 DRICH1Q6PGQ1 229 aaPredicted RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 SPATA31D4Q6ZUB0 917 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 RFX6Q8HWS3 928 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 RNF139Q8WU17 664 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 SLCO2A1Q92959 643 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 TRMT2BQ96GJ1 504 aaKnown RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 GDF15Q99988 308 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 WDCPQ9H6R7 721 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 HOMER3Q9NSC5 361 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 ARHGEF38Q9NXL2 777 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 SAE1Q9UBE0 346 aaPredicted RBP14.81□□□□□ -0.04
USP39-220ENST00000613444 PCDHA11Q9Y5I1 949 aa14.81□□□□□ -0.04
USP39-220ENST00000613444 HEXIM1O94992 359 aaKnown RBP14.8□□□□□ -0.04
USP39-220ENST00000613444 GBP1P32455 592 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 ELF1P32519 619 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DYNLT1P63172 113 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 SNX1Q13596 522 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DHX34Q14147 1143 aaKnown RBP14.8□□□□□ -0.04
USP39-220ENST00000613444 ARTNQ5T4W7 220 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 PLPP4Q5VZY2 271 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 CCDC70Q6NSX1 233 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 MAATS1Q7Z4T9 603 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 ZNF276Q8N554 614 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 PLD5Q8N7P1 536 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 CCDC26Q8TAB7 109 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 OVCA2Q8WZ82 227 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 SLC39A13Q96H72 371 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 CSPG4P5Q96PW8 444 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 TKTL2Q9H0I9 626 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 ENTPD7Q9NQZ7 604 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 RCOR3Q9P2K3 495 aaPredicted RBP14.8□□□□□ -0.04
USP39-220ENST00000613444 FAM72CH0Y354 149 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 LIASO43766 372 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 ADH1AP07327 375 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 PECAM1P16284 738 aaPredicted RBP14.8□□□□□ -0.04
USP39-220ENST00000613444 GOT1P17174 413 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 CA8P35219 290 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 IRS1P35568 1242 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 PBX2P40425 430 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 ERVK-21P61565 698 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DR1Q01658 176 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 TRADDQ15628 312 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 EFHC2Q5JST6 749 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 FAM72AQ5TYM5 149 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 FAM72DQ6L9T8 149 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 FBXO38Q6PIJ6 1188 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DNAJB7Q7Z6W7 309 aaPredicted RBP14.8□□□□□ -0.04
USP39-220ENST00000613444 FAM72BQ86X60 149 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 SLC35B2Q8TB61 432 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 SEC14L1Q92503 715 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 RUBCNQ92622 972 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 PSMG2Q969U7 264 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 HAUS1Q96CS2 278 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 GDF3Q9NR23 364 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DNPEPQ9ULA0 475 aa14.8□□□□□ -0.04
USP39-220ENST00000613444 DOCK4Q8N1I0 1966 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 ZNF840PA6NDX5 716 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 KCNU1A8MYU2 1149 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 APOC4-APOC2K7ER74 178 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 APOC2P02655 101 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 PPP2R5DQ14738 602 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 OASLQ15646 514 aaKnown RBP14.79□□□□□ -0.04
USP39-220ENST00000613444 BRMS1LQ5PSV4 323 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 SND1Q7KZF4 910 aaKnown RBP eCLIP14.79□□□□□ -0.044e-6■■□□□ 12.7
USP39-220ENST00000613444 TMEM150AQ86TG1 271 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 JAMLQ86YT9 394 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 ACTL9Q8TC94 416 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 NKD2Q969F2 451 aaPredicted RBP14.79□□□□□ -0.04
USP39-220ENST00000613444 SERPINB11Q96P15 392 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 TGS1Q96RS0 853 aaKnown RBP14.79□□□□□ -0.04
USP39-220ENST00000613444 TRIM51Q9BSJ1 452 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 CCSER2Q9H7U1 834 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 TLR6Q9Y2C9 796 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 NEU2Q9Y3R4 380 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 NUP205Q92621 2012 aa14.79□□□□□ -0.04
USP39-220ENST00000613444 FAM187AA6NFU0 413 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 TUBBP07437 444 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 OTUD4Q01804 1114 aaKnown RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 GUCY2DQ02846 1103 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 NNTQ13423 1086 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 TFDP2Q14188 446 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 ARL13BQ3SXY8 428 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 NPNTQ6UXI9 565 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 PDZD8Q8NEN9 1154 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 FCRL2Q96LA5 508 aaPredicted RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 RUNDC3BQ96NL0 473 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 EMILIN2Q9BXX0 1053 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 MAK16Q9BXY0 300 aaKnown RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 EPB41L5Q9HCM4 733 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 OLA1Q9NTK5 396 aaKnown RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 SNX10Q9Y5X0 201 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 ESYT3A0FGR9 886 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 TLR5O60602 858 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms