RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 DCAF15Q66K64 600 aa18.95■□□□□ 0.62
UPF1-210ENST00000600689 TRIM42Q8IWZ5 723 aa18.95■□□□□ 0.62
UPF1-210ENST00000600689 PIWIL1Q96J94 861 aaKnown RBP18.95■□□□□ 0.62
UPF1-210ENST00000600689 SIRPGQ9P1W8 387 aa18.95■□□□□ 0.62
UPF1-210ENST00000600689 DTNAQ9Y4J8 743 aa18.95■□□□□ 0.62
UPF1-210ENST00000600689 HMGCRP04035 888 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 KCNA2P16389 499 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 KCNJ11Q14654 390 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 POPDC2Q9HBU9 364 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 HEMK1Q9Y5R4 338 aaPredicted RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 DOCK1Q14185 1865 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 HMX2A2RU54 273 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 PEX1O43933 1283 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 SERPINB5P36952 375 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 RGS7P49802 495 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 CHN2P52757 468 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 TLR1Q15399 786 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 CAND1Q86VP6 1230 aaKnown RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 PIWIL2Q8TC59 973 aaKnown RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 USP13Q92995 863 aaPredicted RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 PRPF18Q99633 342 aaKnown RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 PLAC1Q9HBJ0 212 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 GGA3Q9NZ52 723 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 HMGXB4Q9UGU5 601 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 SESN2P58004 480 aaPredicted RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 ACTR2P61160 394 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 MRPS22P82650 360 aaKnown RBP18.94■□□□□ 0.62
UPF1-210ENST00000600689 PDPK2PQ6A1A2 396 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 SESTD1Q86VW0 696 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 TNS4Q8IZW8 715 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 ADPGKQ9BRR6 497 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 ZNF112Q9UJU3 913 aa18.94■□□□□ 0.62
UPF1-210ENST00000600689 WDR81Q562E7 1941 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 APOEP02649 317 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 SP2Q02086 613 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 C10orf107Q8IVU9 208 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 PRPF31Q8WWY3 499 aaKnown RBP18.93■□□□□ 0.62
UPF1-210ENST00000600689 THAP1Q9NVV9 213 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 A0A1B0GTW7 788 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 CLPTM1O96005 669 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 ASS1P00966 412 aaKnown RBP18.93■□□□□ 0.62
UPF1-210ENST00000600689 GTF2A2P52657 109 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 PKNOX1P55347 436 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 COG7P83436 770 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 ITGA9Q13797 1035 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 OR6B2Q6IFH4 312 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 PTAR1Q7Z6K3 402 aaPredicted RBP18.93■□□□□ 0.62
UPF1-210ENST00000600689 SDCCAG8Q86SQ7 713 aaPredicted RBP18.93■□□□□ 0.62
UPF1-210ENST00000600689 NIF3L1Q9GZT8 377 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 AS3MTQ9HBK9 375 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 GPAMQ9HCL2 828 aa18.93■□□□□ 0.62
UPF1-210ENST00000600689 NDC80O14777 642 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 STBD1O95210 358 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 PSAPP07602 524 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 ITGA2BP08514 1039 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 POLR2BP30876 1174 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 CYTH1Q15438 398 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 CNGA3Q16281 694 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 MAVSQ7Z434 540 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 NLGN2Q8NFZ4 835 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 NSUN6Q8TEA1 469 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 CLMNQ96JQ2 1002 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 PPP1R16BQ96T49 567 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 JPH1Q9HDC5 661 aaPredicted RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 LZTS1Q9Y250 596 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 M0QYV0 167 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TPP1O14773 563 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 KLF11O14901 512 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 MAGEB3O15480 346 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 PABPC4LP0CB38 370 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 BCAR1P56945 870 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 NADK2Q4G0N4 442 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TRIM74Q86UV6 250 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TRIM73Q86UV7 250 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 KLRG1Q96E93 195 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 UBAP1Q9NZ09 502 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 PHIPQ8WWQ0 1821 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 SLC15A5A6NIM6 579 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 METTL18O95568 372 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TRUB2O95900 331 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 ITGAXP20702 1163 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 ALDH1A3P47895 512 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 GALK1P51570 392 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 PGGT1BP53609 377 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 MYBPC3Q14896 1274 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 ANKRD20A4Q4UJ75 823 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 C6orf52Q5T4I8 152 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TEDDM1Q5T9Z0 273 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TMC7Q7Z402 723 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TFB1MQ8WVM0 346 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 CNKSR2Q8WXI2 1034 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 TWNKQ96RR1 684 aa18.92■□□□□ 0.62
UPF1-210ENST00000600689 COPS7BQ9H9Q2 264 aaPredicted RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 LIN28AQ9H9Z2 209 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 DNAAF2Q9NVR5 837 aaKnown RBP18.92■□□□□ 0.62
UPF1-210ENST00000600689 ASLP04424 464 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 PDGFRAP16234 1089 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 ARRB2P32121 409 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 ZNF132P52740 706 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 CNTN2Q02246 1040 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms