RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 UAP1L1Q3KQV9 507 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 SH3PXD2AQ5TCZ1 1133 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 PM20D1Q6GTS8 502 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 TMEM270Q6UE05 265 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 KIAA1324Q6UXG2 1013 aaKnown RBP10.25□□□□□ -0.77
VRK3-216ENST00000599342 FMNL3Q8IVF7 1028 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 PPM1KQ8N3J5 372 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 DEFB119Q8N690 84 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 CEP76Q8TAP6 659 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 UBA3Q8TBC4 463 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 GOLGA1Q92805 767 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 CNGB3Q9NQW8 809 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 TMEM74BQ9NUR3 256 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 FBXO10Q9UK96 956 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 PILRBQ9UKJ0 227 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 MAN1B1Q9UKM7 699 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 HBS1LQ9Y450 684 aaKnown RBP10.25□□□□□ -0.77
VRK3-216ENST00000599342 PCDHB4Q9Y5E5 795 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 STON1Q9Y6Q2 735 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 SDK1Q7Z5N4 2213 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 WASH3PC4AMC7 463 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 M0QYV0 167 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 O00370 1275 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 CDX4O14627 284 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 SYNCRIPO60506 623 aaKnown RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 LCP1P13796 627 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 ENGP17813 658 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 ZNF132P52740 706 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 ZNF445P59923 1031 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 GFPT1Q06210 699 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 ZNF252P-AS1Q0IIN9 211 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 STILQ15468 1287 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 TRIP4Q15650 581 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 GEN1Q17RS7 908 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 DUOXA1Q1HG43 343 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 MPPE1Q53F39 396 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 SYCP2LQ5T4T6 812 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 PEAR1Q5VY43 1037 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 BSPRYQ5W0U4 402 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 SLC23A3Q6PIS1 610 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 ELOA2Q8IYF1 753 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 RGL4Q8IZJ4 473 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 NELFBQ8WX92 580 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 KCTD13Q8WZ19 329 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 NDRG1Q92597 394 aaKnown RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 EDEM1Q92611 657 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 MRGPRX1Q96LB2 322 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 HSPA12BQ96MM6 686 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 SLC2A11Q9BYW1 496 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 CIPCQ9C0C6 399 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 SLC6A17Q9H1V8 727 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 CD248Q9HCU0 757 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 ABCC13Q9NSE7 274 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 THAP10Q9P2Z0 257 aaPredicted RBP10.24□□□□□ -0.77
VRK3-216ENST00000599342 SFMBT1Q9UHJ3 866 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 CTNND2Q9UQB3 1225 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 NUP205Q92621 2012 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 WDR87Q6ZQQ6 2873 aa10.24□□□□□ -0.77
VRK3-216ENST00000599342 PLXND1Q9Y4D7 1925 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 YJEFN3A6XGL0 299 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 E7ENQ6 273 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 PMM2O15305 246 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 P4HA2O15460 535 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 LATS1O95835 1130 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 GNA14O95837 355 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 CEACAM1P13688 526 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 CD44P16070 742 aaKnown RBP10.23□□□□□ -0.77
VRK3-216ENST00000599342 CSRP1P21291 193 aaKnown RBP10.23□□□□□ -0.77
VRK3-216ENST00000599342 CD6P30203 668 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 IL12RB1P42701 662 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 RGS7P49802 495 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 DAOAP59103 153 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 SHC2P98077 582 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 ST3GAL2Q16842 350 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 FUT11Q495W5 492 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 TTI2Q6NXR4 508 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 FOXR2Q6PJQ5 311 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 LCLAT1Q6UWP7 414 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 SERPINA13PQ6UXR4 307 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 BHLHA9Q7RTU4 235 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 FAM217AQ8IXS0 508 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 ABCA7Q8IZY2 2146 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 SCML4Q8N228 414 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 HDDC3Q8N4P3 179 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 UBR7Q8N806 425 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 TRIML1Q8N9V2 468 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 RBBP8NLQ8NC74 664 aaPredicted RBP10.23□□□□□ -0.77
VRK3-216ENST00000599342 FOXJ1Q92949 421 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 P2RY11Q96G91 374 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 PIWIL1Q96J94 861 aaKnown RBP10.23□□□□□ -0.77
VRK3-216ENST00000599342 GTPBP2Q9BX10 602 aaKnown RBP10.23□□□□□ -0.77
VRK3-216ENST00000599342 SLC32A1Q9H598 525 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 PRDM16Q9HAZ2 1276 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 ELOVL2Q9NXB9 296 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 SLC6A14Q9UN76 642 aa10.23□□□□□ -0.77
VRK3-216ENST00000599342 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.23□□□□□ -0.77
VRK3-216ENST00000599342 MEI4A8MW99 385 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 PIK3R2O00459 728 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 BIN1O00499 593 aa10.22□□□□□ -0.77
VRK3-216ENST00000599342 GIPC1O14908 333 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms