RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	IGF2R	P11717	2491 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	CETN3	O15182	167 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	HYAL3	O43820	417 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PRKCH	P24723	683 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	MAOB	P27338	520 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	CHKA	P35790	457 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PRCP	P42785	496 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	TKTL1	P51854	596 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	MCCD1	P59942	119 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	FAM193A	P78312	1265 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	SIM1	P81133	766 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PDE4C	Q08493	712 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	STARD3	Q14849	445 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PLEKHG6	Q3KR16	790 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	TCERG1L	Q5VWI1	586 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	CACUL1	Q86Y37	369 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	RGL4	Q8IZJ4	473 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	ARHGAP18	Q8N392	663 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	ANKRD52	Q8NB46	1076 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	TOE1	Q96GM8	510 aa	Known RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	ZNF419	Q96HQ0	510 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PIWIL1	Q96J94	861 aa	Known RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	DCLK3	Q9C098	648 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	MKRN2	Q9H000	416 aa	Known RBP	11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PRDM16	Q9HAZ2	1276 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	STRIP2	Q9ULQ0	834 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	PI4KA	P42356	2102 aa		11.03	□□□□□ -0.64
LSM4-205	ENST00000597776	CACNA1E	Q15878	2313 aa		11.02	□□□□□ -0.64
LSM4-205	ENST00000597776	UPK3BL1	B0FP48	263 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	KCNJ18	B7U540	433 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	UPK3BL2	E5RIL1	263 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ARHGAP33	O14559	1287 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	STX10	O60499	249 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	TSPAN3	O60637	253 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	OPHN1	O60890	802 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ZBED1	O96006	694 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CYBB	P04839	570 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CD59	P13987	128 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CD6	P30203	668 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	PMS1	P54277	932 aa	Known RBP	11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	BCAT1	P54687	386 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	SLC8A3	P57103	927 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ADIG	Q0VDE8	80 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	LRMP	Q12912	555 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CUL2	Q13617	745 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ENPP2	Q13822	863 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ZNF234	Q14588	700 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	TMEM215	Q68D42	235 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	PM20D1	Q6GTS8	502 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ANKS1B	Q7Z6G8	1248 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	RABEPK	Q7Z6M1	372 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	FMNL3	Q8IVF7	1028 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	TTC39C	Q8N584	583 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	UBA3	Q8TBC4	463 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	DDI1	Q8WTU0	396 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	EDEM1	Q92611	657 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ERCC4	Q92889	916 aa	Predicted RBP	11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	GATA6	Q92908	595 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	FAXDC2	Q96IV6	333 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CAMK1G	Q96NX5	476 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	GPR174	Q9BXC1	333 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	UBXN6	Q9BZV1	441 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	CIPC	Q9C0C6	399 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ELOVL2	Q9NXB9	296 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	USP36	Q9P275	1121 aa	Known RBP	11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	THAP10	Q9P2Z0	257 aa	Predicted RBP	11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	KLK13	Q9UKR3	277 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	TSPAN16	Q9UKR8	245 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	ZMIZ1	Q9ULJ6	1067 aa		11.02	□□□□□ -0.65
LSM4-205	ENST00000597776	TRIM49B	A6NDI0	452 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	YJEFN3	A6XGL0	299 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	MEI4	A8MW99	385 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776		E7ENQ6	273 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	XPO1	O14980	1071 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SLC16A3	O15427	465 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	MSI1	O43347	362 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SYNCRIP	O60506	623 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SYP	P08247	313 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	CD19	P15391	556 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	HOXD9	P28356	352 aa	Predicted RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	TPMT	P51580	245 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	GRIK2	Q13002	908 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	TRIP4	Q15650	581 aa	Predicted RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SGO2	Q562F6	1265 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SYCP2L	Q5T4T6	812 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	ANKRD40	Q6AI12	368 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	TMPRSS6	Q8IU80	811 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	FAM217A	Q8IXS0	508 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	CPXM2	Q8N436	756 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	RBBP8NL	Q8NC74	664 aa	Predicted RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	UCMA	Q8WVF2	138 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	FOXJ1	Q92949	421 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	PLD4	Q96BZ4	506 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	IPO9	Q96P70	1041 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	TSG101	Q99816	390 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	FAM124B	Q9H5Z6	455 aa	Predicted RBP	11.01	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms