RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MMP17Q9ULZ9 603 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 TRIM24O15164 1050 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 MSI1O43347 362 aaKnown RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 APBB3O95704 486 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 PENKP01210 267 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 PNMA6AP0CW24 399 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 HOXB3P14651 431 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 CHKAP35790 457 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 TNFRSF4P43489 277 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 KIR2DL1P43626 348 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 ACADSBP45954 432 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 PXNP49023 591 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 KCNMA1Q12791 1236 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 SRSF5Q13243 272 aaKnown RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 HSF5Q4G112 596 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 C10orf76Q5T2E6 689 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 FAM217AQ8IXS0 508 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 CPXM2Q8N436 756 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 CCDC33Q8N5R6 958 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 ALLCQ8N6M5 410 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 TSTD1Q8NFU3 115 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 NETO1Q8TDF5 533 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 BHMTQ93088 406 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 P2RY11Q96G91 374 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 LSM14BQ9BX40 385 aaKnown RBP15.77■□□□□ 0.12
TRIM28-205ENST00000595028 MIS12Q9H081 205 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 PCDHGC3Q9UN70 934 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 FHOD1Q9Y613 1164 aa15.77■□□□□ 0.12
TRIM28-205ENST00000595028 TBC1D3BA6NDS4 549 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 E5RJQ4 531 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 FOXN3O00409 490 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 PAPSS1O43252 624 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 HRO43593 1189 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 KLF8O95600 359 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 TIE1P35590 1138 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 HARS2P49590 506 aaKnown RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 MYL5Q02045 173 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 PTK2Q05397 1052 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 SPEM2Q0P670 501 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 SIM2Q14190 667 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 KRT31Q15323 416 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 FYB2Q5VWT5 728 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 PRR23BQ6ZRT6 265 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 SCUBE3Q8IX30 993 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 FAM71AQ8IYT1 594 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 IL17RCQ8NAC3 791 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 TXNDC5Q8NBS9 432 aaKnown RBP15.76■□□□□ 0.11
TRIM28-205ENST00000595028 PLK2Q9NYY3 685 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 TMEM63CQ9P1W3 806 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 ANGPTL2Q9UKU9 493 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 RAB23Q9ULC3 237 aa15.76■□□□□ 0.11
TRIM28-205ENST00000595028 SDK1Q7Z5N4 2213 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-205ENST00000595028 AXIN1O15169 862 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 LATS1O95835 1130 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 IGLV3-27P01718 113 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 FYNP06241 537 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 DGKGP49619 791 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 RAPGEF1Q13905 1077 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 DRAP1Q14919 205 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-205ENST00000595028 ACAP1Q15027 740 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 CRY1Q16526 586 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 LPAL2Q16609 132 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 EMC10Q5UCC4 262 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 KLHDC7AQ5VTJ3 777 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 LAIR1Q6GTX8 287 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 TOGARAM2Q6ZUX3 1019 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 NUDT18Q6ZVK8 323 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 TMEM110Q86TL2 294 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 SLC47A2Q86VL8 602 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 PASD1Q8IV76 773 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 ZNF513Q8N8E2 541 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-205ENST00000595028 KCNV2Q8TDN2 545 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 DQX1Q8TE96 717 aaKnown RBP15.75■□□□□ 0.11
TRIM28-205ENST00000595028 GAB3Q8WWW8 586 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 FAM149B1Q96BN6 582 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 TRIM62Q9BVG3 475 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 NAA15Q9BXJ9 866 aaKnown RBP15.75■□□□□ 0.11
TRIM28-205ENST00000595028 ZDHHC4Q9NPG8 344 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 FANCLQ9NW38 375 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 EBF1Q9UH73 591 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 STOML2Q9UJZ1 356 aa15.75■□□□□ 0.11
TRIM28-205ENST00000595028 SGK1O00141 431 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 ADAM23O75077 832 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 RPP40O75818 363 aaKnown RBP15.74■□□□□ 0.11
TRIM28-205ENST00000595028 CYBBP04839 570 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 TPM2P07951 284 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 CISD3P0C7P0 127 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 NCAM1P13591 858 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 HNRNPLP14866 589 aaKnown RBP eCLIP15.74■□□□□ 0.11
TRIM28-205ENST00000595028 UCHL3P15374 230 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 KCNA4P22459 653 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 CLCN1P35523 988 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 DGKEP52429 567 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 ZNF445P59923 1031 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 TYRO3Q06418 890 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 RING1Q06587 406 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 NNTQ13423 1086 aa15.74■□□□□ 0.11
TRIM28-205ENST00000595028 EOGTQ5NDL2 527 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms