RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 UCMAQ8WVF2 138 aa25.07■■□□□ 1.6
LSM4-202ENST00000593564 TATDN2Q93075 761 aa25.07■■□□□ 1.6
LSM4-202ENST00000593564 TMEM121BQ9BXQ6 578 aaPredicted RBP25.07■■□□□ 1.6
LSM4-202ENST00000593564 CEP192Q8TEP8 1941 aa25.07■■□□□ 1.6
LSM4-202ENST00000593564 PCDH15Q96QU1 1955 aa25.07■■□□□ 1.6
LSM4-202ENST00000593564 ARHGAP33O14559 1287 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 OPHN1O60890 802 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 CYBBP04839 570 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 FUT11Q495W5 492 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 SYCP2LQ5T4T6 812 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 PM20D1Q6GTS8 502 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 ANKS1BQ7Z6G8 1248 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 DENND1CQ8IV53 801 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 MINDY1Q8N5J2 469 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 FOXJ1Q92949 421 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 PIWIL1Q96J94 861 aaKnown RBP25.06■■□□□ 1.6
LSM4-202ENST00000593564 SCNM1Q9BWG6 230 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 ASPMQ8IZT6 3477 aa25.06■■□□□ 1.6
LSM4-202ENST00000593564 SLC12A8A0AV02 714 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 ZBED1O96006 694 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 SYPP08247 313 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 CD6P30203 668 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 IL12RB1P42701 662 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 TKTL1P51854 596 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 E2F5Q15329 346 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 FAM217AQ8IXS0 508 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 KDF1Q8NAX2 398 aaPredicted RBP25.05■■□□□ 1.6
LSM4-202ENST00000593564 PLD4Q96BZ4 506 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 USP36Q9P275 1121 aaKnown RBP25.05■■□□□ 1.6
LSM4-202ENST00000593564 SUSD2Q9UGT4 822 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 COQ4Q9Y3A0 265 aa25.05■■□□□ 1.6
LSM4-202ENST00000593564 XPO1O14980 1071 aaKnown RBP25.04■■□□□ 1.6
LSM4-202ENST00000593564 SLC16A3O15427 465 aaKnown RBP25.04■■□□□ 1.6
LSM4-202ENST00000593564 EIF4HQ15056 248 aaKnown RBP25.04■■□□□ 1.6
LSM4-202ENST00000593564 CBWD6Q4V339 395 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 CBWD3Q5JTY5 395 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 WDR45BQ5MNZ6 344 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 CBWD5Q5RIA9 395 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 BHLHA9Q7RTU4 235 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 RGL4Q8IZJ4 473 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 SLC2A11Q9BYW1 496 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 ULBP1Q9BZM6 244 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 MKRN2Q9H000 416 aaKnown RBP25.04■■□□□ 1.6
LSM4-202ENST00000593564 PRDM16Q9HAZ2 1276 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 DNAAF2Q9NVR5 837 aaKnown RBP25.04■■□□□ 1.6
LSM4-202ENST00000593564 RMND1Q9NWS8 449 aa25.04■■□□□ 1.6
LSM4-202ENST00000593564 SPAARA0A1B0GVQ0 90 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 PRCPP42785 496 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 BCAT1P54687 386 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 SIM1P81133 766 aaPredicted RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 PNOCQ13519 176 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 CUL2Q13617 745 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 TRIP4Q15650 581 aaPredicted RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 GOLGA7BQ2TAP0 167 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 PLEKHG6Q3KR16 790 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 COBLL1Q53SF7 1204 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 DCAF17Q5H9S7 520 aaPredicted RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 TCERG1LQ5VWI1 586 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 ZC3H3Q8IXZ2 948 aaKnown RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 RBBP8NLQ8NC74 664 aaPredicted RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 DDI1Q8WTU0 396 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 GATA6Q92908 595 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 TOE1Q96GM8 510 aaKnown RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 ITM2CQ9NQX7 267 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 OLA1Q9NTK5 396 aaKnown RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 ELOVL2Q9NXB9 296 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 WSB2Q9NYS7 404 aaPredicted RBP25.03■■□□□ 1.6
LSM4-202ENST00000593564 TSPAN16Q9UKR8 245 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 CLEC4EQ9ULY5 219 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 NFE2L3Q9Y4A8 694 aa25.03■■□□□ 1.6
LSM4-202ENST00000593564 TMEM8BA6NDV4 472 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 TULP2O00295 520 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 SYNCRIPO60506 623 aaKnown RBP25.02■■□□□ 1.6
LSM4-202ENST00000593564 CD59P13987 128 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 GNSP15586 552 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 PDE4CQ08493 712 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 ZNF234Q14588 700 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 SGO2Q562F6 1265 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 OR2I1PQ8NGU4 316 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 TSG101Q99816 390 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 GDPD2Q9HCC8 539 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 ZMIZ1Q9ULJ6 1067 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 NEUROG3Q9Y4Z2 214 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 ADAMTS9Q9P2N4 1935 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 ZZEF1O43149 2961 aa25.02■■□□□ 1.6
LSM4-202ENST00000593564 YWHAEP62258 255 aaKnown RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 FKBP3Q00688 224 aaKnown RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 BST2Q10589 180 aaKnown RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 SLC14A1Q13336 389 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 HNRNPDQ14103 355 aaKnown RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 ZNF658Q5TYW1 1059 aaPredicted RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 TMPRSS6Q8IU80 811 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 CADM4Q8NFZ8 388 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 DNASE2BQ8WZ79 361 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 LRRC4Q9HBW1 653 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 HESX1Q9UBX0 185 aa25.01■■□□□ 1.59
LSM4-202ENST00000593564 HBS1LQ9Y450 684 aaKnown RBP25.01■■□□□ 1.59
LSM4-202ENST00000593564 AKAP13Q12802 2813 aa25■■□□□ 1.59
LSM4-202ENST00000593564 TIMM44O43615 452 aa25■■□□□ 1.59
LSM4-202ENST00000593564 HYAL3O43820 417 aaPredicted RBP25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms