RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 XIAPP98170 497 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 SLC25A3Q00325 362 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 DYNC1I2Q13409 638 aaKnown RBP15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 CCDC14Q49A88 953 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 RNF111Q6ZNA4 994 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 RAPH1Q70E73 1250 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 NCAPG2Q86XI2 1143 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 NIM1KQ8IY84 436 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 MPP5Q8N3R9 675 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 OR6Y1Q8NGX8 325 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 CXorf38Q8TB03 319 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 TBCBQ99426 244 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 APOL6Q9BWW8 343 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 SPATA16Q9BXB7 569 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 MIS12Q9H081 205 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 FZD8Q9H461 694 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 EBF3Q9H4W6 596 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 VRTNQ9H8Y1 702 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 DNAJC16Q9Y2G8 782 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 MAD1L1Q9Y6D9 718 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 SLC4A7Q9Y6M7 1214 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 IGKV6-21A0A0C4DH24 114 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 ZNF487B1APH4 448 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 ITM2AO43736 263 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 LIN52Q52LA3 116 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 ATF7IP2Q5U623 682 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 OR6B2Q6IFH4 312 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 FAM183BPQ6ZVS7 135 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 CDKL3Q8IVW4 592 aaPredicted RBP15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 UBA3Q8TBC4 463 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 TRIM56Q9BRZ2 755 aaKnown RBP15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 EMCNQ9ULC0 261 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 APOBEC2Q9Y235 224 aaKnown RBP15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 LOC285556D6RIA3 1793 aa15.34■□□□□ 0.05
SMARCA4-219ENST00000592604 MEI4A8MW99 385 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 ALDH1A2O94788 518 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 TOP3BO95985 862 aaKnown RBP15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 MYL4P12829 197 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 SLC1A6P48664 564 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 RPS6KA3P51812 740 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 HMGCS2P54868 508 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 CNPY1Q3B7I2 92 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 EEF1DP3Q658K8 133 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 STEAP4Q687X5 459 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 DPY19L2Q6NUT2 758 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 CATSPERGQ6ZRH7 1159 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 PPP1R14CQ8TAE6 165 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 SHKBP1Q8TBC3 707 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 DEPDC1BQ8WUY9 529 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 PIWIL1Q96J94 861 aaKnown RBP15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 FAM167AQ96KS9 214 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 ZNF670Q9BS34 389 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 GCOM2Q9BZD3 368 aaPredicted RBP15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 FAM96AQ9H5X1 160 aa15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 RPF1Q9H9Y2 349 aaKnown RBP15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 GBA2Q9HCG7 927 aaPredicted RBP15.33■□□□□ 0.05
SMARCA4-219ENST00000592604 ARHGAP42A6NI28 874 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 CXCL8P10145 99 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 PTPRAP18433 802 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 COPAP53621 1224 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 CDO1Q16878 200 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 MARK2Q7KZI7 788 aaKnown RBP15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 RASSF3Q86WH2 238 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.33■□□□□ 0.042e-6■■□□□ 12.8
SMARCA4-219ENST00000592604 ACTRT2Q8TDY3 377 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 JADE3Q92613 823 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 HEXIM2Q96MH2 286 aaKnown RBP15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 GORASP1Q9BQQ3 440 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 CENPKQ9BS16 269 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 VCX3BQ9H321 246 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 GPATCH2LQ9NWQ4 482 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 AFG3L2Q9Y4W6 797 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 MDM4O15151 490 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 SIN3BO75182 1162 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 GLRA3O75311 464 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 LYPLA1O75608 230 aaPredicted RBP15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 TOMM70O94826 608 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 ATICP31939 592 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 RPL26P61254 145 aaKnown RBP15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 ASPHQ12797 758 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 RASIP1Q5U651 963 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 LCLAT1Q6UWP7 414 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 SEPT1Q8WYJ6 367 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 DNAJC28Q9NX36 388 aa15.33■□□□□ 0.04
SMARCA4-219ENST00000592604 C19orf81C9J6K1 198 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 PLIN3O60664 434 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 NFICP08651 508 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 ALOX15P16050 662 aaPredicted RBP15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 CYP3A5P20815 502 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 TCF7P36402 384 aaPredicted RBP15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 CCNIQ14094 377 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 RALGPS1Q5JS13 557 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 SCYL2Q6P3W7 929 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 TMEM192Q8IY95 271 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 EXOC8Q8IYI6 725 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 PYDC1Q8WXC3 89 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 OLFM3Q96PB7 478 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 MMP19Q99542 508 aa15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 SNRNP25Q9BV90 132 aaKnown RBP15.32■□□□□ 0.04
SMARCA4-219ENST00000592604 CDT1Q9H211 546 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms