RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SLC13A5Q86YT5 568 aaPredicted RBP26.08■■□□□ 1.77
SHMT1-207ENST00000580002 PDZD8Q8NEN9 1154 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 OVCA2Q8WZ82 227 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 ZNF707Q96C28 371 aaPredicted RBP26.08■■□□□ 1.77
SHMT1-207ENST00000580002 PRDM12Q9H4Q4 367 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 MARCH2Q9P0N8 246 aa26.08■■□□□ 1.77
SHMT1-207ENST00000580002 SLC12A8A0AV02 714 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 LINC01565O15544 149 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 TUBB2AQ13885 445 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 KCNC3Q14003 757 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 DPYSL3Q14195 570 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 PPP6R3Q5H9R7 873 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-207ENST00000580002 HECTD3Q5T447 861 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 TEKT4Q8WW24 435 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 WBP2Q969T9 261 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 FCRL2Q96LA5 508 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-207ENST00000580002 TUBB2BQ9BVA1 445 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 OSBPL8Q9BZF1 889 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 GKN1Q9NS71 199 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 CCDC195A0A1B0GUA6 201 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 A0A1W2PRU2 124 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 PGRMC1O00264 195 aaKnown RBP26.07■■□□□ 1.76
SHMT1-207ENST00000580002 F9P00740 461 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 GBP1P32455 592 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 TCEAL5Q5H9L2 206 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 SLC39A13Q96H72 371 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 CALN1Q9BXU9 219 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 TRPC7Q9HCX4 862 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 CDH22Q9UJ99 828 aa26.07■■□□□ 1.76
SHMT1-207ENST00000580002 hCG_1818297A0A087WSY0 165 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 MOCS2O96007 188 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 OAS1P00973 400 aaKnown RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 KCNQ1P51787 676 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 TBX4P57082 545 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 MRPS25P82663 173 aaKnown RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 SIX1Q15475 284 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 POTEHQ6S545 545 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 UBE2Q2Q8WVN8 375 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 FAM118BQ9BPY3 351 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 APOL5Q9BWW9 433 aa26.06■■□□□ 1.76
SHMT1-207ENST00000580002 RBM12Q9NTZ6 932 aaKnown RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 UXTQ9UBK9 157 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 TTC7AQ9ULT0 858 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-207ENST00000580002 SOX1O00570 391 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 MOSPD3O75425 235 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ATP5C1P36542 298 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 PAFAH1B1P43034 410 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 HYAL1Q12794 435 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 KRT81Q14533 505 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 SLC5A9Q2M3M2 681 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 LRIT3Q3SXY7 679 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ELMOD1Q8N336 334 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 NOA1Q8NC60 698 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 SPATA4Q8NEY3 305 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 RBM41Q96IZ5 413 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 SERPINB11Q96P15 392 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 NCAPGQ9BPX3 1015 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ATXN3LQ9H3M9 355 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ARHGEF38Q9NXL2 777 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 R3HDM2Q9Y2K5 976 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ANAPC1Q9H1A4 1944 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 GLP2RO95838 553 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ZXDBP98169 803 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 NAA30Q147X3 362 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 GRIN2CQ14957 1233 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 TAZQ16635 292 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ODF2Q5BJF6 829 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 TMC5Q6UXY8 1006 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 SND1Q7KZF4 910 aaKnown RBP eCLIP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 GRASPQ7Z6J2 395 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ARL14EPQ8N8R7 260 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 ASAH2Q9NR71 780 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 OLA1Q9NTK5 396 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 CWC15Q9P013 229 aaKnown RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 NOL12Q9UGY1 213 aaKnown RBP eCLIP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 TLR6Q9Y2C9 796 aa26.05■■□□□ 1.76
SHMT1-207ENST00000580002 V9GYY5 206 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-207ENST00000580002 PRRC2BQ5JSZ5 2229 aaKnown RBP26.04■■□□□ 1.76
SHMT1-207ENST00000580002 SPDYE4A6NLX3 237 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 KCNU1A8MYU2 1149 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 SLU7O95391 586 aaKnown RBP26.04■■□□□ 1.76
SHMT1-207ENST00000580002 RHOP08100 348 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 DYNLT1P63172 113 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 DPYSL2Q16555 572 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 ARTNQ5T4W7 220 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 NTAN1Q96AB6 310 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 PRKD2Q9BZL6 878 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 SIK2Q9H0K1 926 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 SMPD4Q9NXE4 827 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 SAE1Q9UBE0 346 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-207ENST00000580002 DNMT3LQ9UJW3 386 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 MFHAS1Q9Y4C4 1052 aa26.04■■□□□ 1.76
SHMT1-207ENST00000580002 NOTCH4Q99466 2003 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 C1RP00736 705 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 GOT1P17174 413 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 KLF1Q13351 362 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-207ENST00000580002 TRIP4Q15650 581 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-207ENST00000580002 TFDP3Q5H9I0 405 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 MAB21L3Q8N8X9 362 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 SHKBP1Q8TBC3 707 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms