RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 BBS2Q9BXC9 721 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 EDEM3Q9BZQ6 932 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 TSPY26PQ9H489 355 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 SYNCQ9H7C4 482 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 TLR6Q9Y2C9 796 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 ATG2BQ96BY7 2078 aa20.14■□□□□ 0.81
SS18-208ENST00000577751 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.13■□□□□ 0.81
SS18-208ENST00000577751 CHURC1-FNTBB4DL54 471 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 GFRA2O00451 464 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 RNF40O75150 1001 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 PENKP01210 267 aaPredicted RBP20.13■□□□□ 0.81
SS18-208ENST00000577751 SP9P0CG40 484 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 TYRP14679 529 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 FERP16591 822 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 SCNN1AP37088 669 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 CCR3P51677 355 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 TBX4P57082 545 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 ZNF528Q3MIS6 628 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 NAA35Q5VZE5 725 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 NUGGCQ68CJ6 796 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 TRIM72Q6ZMU5 477 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 TAC4Q86UU9 113 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 XYLT1Q86Y38 959 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 UNC45BQ8IWX7 931 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 DEFB106AQ8N104 65 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 NAT16Q8N8M0 369 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 CPA5Q8WXQ8 436 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 FCRL2Q96LA5 508 aaPredicted RBP20.13■□□□□ 0.81
SS18-208ENST00000577751 PCDHB18PQ96TA0 734 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 FBXO10Q9UK96 956 aa20.13■□□□□ 0.81
SS18-208ENST00000577751 CACNA1HO95180 2353 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 NEDD8-MDP1E9PL57 170 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 KAT7O95251 611 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 PAPSS2O95340 614 aaPredicted RBP20.12■□□□□ 0.81
SS18-208ENST00000577751 TRUB2O95900 331 aaKnown RBP20.12■□□□□ 0.81
SS18-208ENST00000577751 UNGP13051 313 aaPredicted RBP20.12■□□□□ 0.81
SS18-208ENST00000577751 PITX1P78337 314 aaPredicted RBP20.12■□□□□ 0.81
SS18-208ENST00000577751 ARID5AQ03989 594 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 DCAF6Q58WW2 860 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 ADGRF1Q5T601 910 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 FYB2Q5VWT5 728 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 PKN3Q6P5Z2 889 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 ADAM32Q8TC27 787 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 ARHGEF4Q9NR80 690 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 DEC1Q9P2X7 70 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 FANCMQ8IYD8 2048 aa20.12■□□□□ 0.81
SS18-208ENST00000577751 IRAK2O43187 625 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 DAB1O75553 588 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 GRAP2O75791 330 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 APODP05090 189 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 CCDC172P0C7W6 258 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 CHRM1P11229 460 aaPredicted RBP20.11■□□□□ 0.81
SS18-208ENST00000577751 TDGF1P13385 188 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 MMP8P22894 467 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 GRIA2P42262 883 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 CXCL12P48061 93 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 SATB1Q01826 763 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 PREPLQ4J6C6 727 aaPredicted RBP20.11■□□□□ 0.81
SS18-208ENST00000577751 MSANTD4Q8NCY6 345 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 CCDC26Q8TAB7 109 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 NELL1Q92832 810 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 ATOH1Q92858 354 aaPredicted RBP20.11■□□□□ 0.81
SS18-208ENST00000577751 XPO6Q96QU8 1125 aaKnown RBP20.11■□□□□ 0.81
SS18-208ENST00000577751 AGPAT1Q99943 283 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 SYT11Q9BT88 431 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 NUP58Q9BVL2 599 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 C2orf42Q9NWW7 574 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 AIPL1Q9NZN9 384 aa20.11■□□□□ 0.81
SS18-208ENST00000577751 LRRC53A6NM62 1247 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 TRIM24O15164 1050 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 ATG13O75143 517 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 CISD3P0C7P0 127 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 NOS2P35228 1153 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 MATKP42679 507 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 TNFRSF4P43489 277 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 ZNF445P59923 1031 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 CDK17Q00537 523 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 CENPCQ03188 943 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 CSTF1Q05048 431 aaKnown RBP20.1■□□□□ 0.81
SS18-208ENST00000577751 C2CD6Q53TS8 623 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 SFTPA1Q8IWL2 248 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 TERB1Q8NA31 727 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 USP33Q8TEY7 942 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 IRX2Q9BZI1 471 aaPredicted RBP20.1■□□□□ 0.81
SS18-208ENST00000577751 DNAJC17Q9NVM6 304 aaKnown RBP20.1■□□□□ 0.81
SS18-208ENST00000577751 PLK2Q9NYY3 685 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 IFNKQ9P0W0 207 aa20.1■□□□□ 0.81
SS18-208ENST00000577751 ANTXRLA6NF34 631 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 ACSL4O60488 711 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 CYBBP04839 570 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 PLA2G5P39877 138 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 NBL1P41271 181 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 KIR2DL1P43626 348 aaPredicted RBP20.09■□□□□ 0.81
SS18-208ENST00000577751 SLC11A2P49281 568 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 KDSRQ06136 332 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 PTP4A2Q12974 167 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 CLEC16AQ2KHT3 1053 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 FAM133BQ5BKY9 247 aaKnown RBP20.09■□□□□ 0.81
SS18-208ENST00000577751 TSSK4Q6SA08 328 aa20.09■□□□□ 0.81
SS18-208ENST00000577751 ARCQ7LC44 396 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms