RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.65□□□□□ -0.7
SS18-207ENST00000577636 MAP1BP46821 2468 aaKnown RBP10.65□□□□□ -0.7
SS18-207ENST00000577636 TRIP11Q15643 1979 aa10.65□□□□□ -0.71
SS18-207ENST00000577636 OR6C75A6NL08 312 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 C1QTNF9BB2RNN3 333 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MYO1FO00160 1098 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 EPN2O95208 641 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 PRAMEF12O95522 483 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 PROS1P07225 676 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 FAM163BP0C2L3 166 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 C1QTNF9P0C862 333 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 DESP17661 470 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 SPINK2P20155 84 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MPLP40238 635 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 SLC1A1P43005 524 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 NOVA1P51513 510 aaKnown RBP10.64□□□□□ -0.71
SS18-207ENST00000577636 NDST1P52848 882 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 RAD23BP54727 409 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 CDH8P55286 799 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 GRSF1Q12849 480 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-207ENST00000577636 FOXC1Q12948 553 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 CCINQ13939 588 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MESDQ14696 234 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 CNGA2Q16280 664 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 ERCC6LQ2NKX8 1250 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 ITPRIPL2Q3MIP1 535 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MGAT5BQ3V5L5 792 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 TRIM68Q6AZZ1 485 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 OVOS1Q6IE37 1185 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 TCEAL6Q6IPX3 200 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 DNAJC24Q6P3W2 148 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MMS22LQ6ZRQ5 1243 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 MON1BQ7L1V2 547 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 DPH6Q7L8W6 267 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 SYNPOQ8N3V7 929 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 SLC4A11Q8NBS3 891 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 TTC16Q8NEE8 873 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 OR6B3Q8NGW1 331 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 GIPC2Q8TF65 315 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 TCEAL3Q969E4 200 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 LOXL4Q96JB6 756 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 TNIP3Q96KP6 325 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 GCNAQ96QF7 691 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 HHIPQ96QV1 700 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 PSMB7Q99436 277 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 SEPT5Q99719 369 aaPredicted RBP10.64□□□□□ -0.71
SS18-207ENST00000577636 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 C11orf70Q9BRQ4 267 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 WDR35Q9P2L0 1181 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
SS18-207ENST00000577636 ZMIZ1Q9ULJ6 1067 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 INVSQ9Y283 1065 aa10.64□□□□□ -0.71
SS18-207ENST00000577636 V9GYY5 206 aaPredicted RBP10.64□□□□□ -0.71
SS18-207ENST00000577636 KMT2BQ9UMN6 2715 aaPredicted RBP10.64□□□□□ -0.71
SS18-207ENST00000577636 FAM170AA1A519 330 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CCDC66A2RUB6 948 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 MTMR11A4FU01 709 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 A8MXQ7 604 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 M0QZQ0 153 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 PGRMC1O00264 195 aaKnown RBP10.63□□□□□ -0.71
SS18-207ENST00000577636 PIRO00625 290 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 GIPC1O14908 333 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 DCLK1O15075 740 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
SS18-207ENST00000577636 CEP104O60308 925 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ATG13O75143 517 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 OAZ2O95190 189 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CALCAP01258 141 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 MMP8P22894 467 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 RRM1P23921 792 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 LRPAP1P30533 357 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 HOXA6P31267 233 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CXCR5P32302 372 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CETN2P41208 172 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 SLC8A3P57103 927 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 SHC2P98077 582 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CREB5Q02930 508 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 GPR17Q13304 367 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ELF2Q15723 593 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 DCUN1D2Q6PH85 259 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 RSRC2Q7L4I2 434 aaKnown RBP10.63□□□□□ -0.71
SS18-207ENST00000577636 MTERF4Q7Z6M4 381 aaKnown RBP10.63□□□□□ -0.71
SS18-207ENST00000577636 ITIH5Q86UX2 942 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 NT5DC3Q86UY8 548 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CREG2Q8IUH2 290 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 C1orf131Q8NDD1 294 aaKnown RBP10.63□□□□□ -0.71
SS18-207ENST00000577636 PSMG2Q969U7 264 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 HES6Q96HZ4 224 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 SDCBP2Q9H190 292 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 EBF3Q9H4W6 596 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 TASP1Q9H6P5 420 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 VPS45Q9NRW7 570 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 GDAP2Q9NXN4 497 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ANAPC7Q9UJX3 599 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ASB3Q9Y575 518 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 ALG6Q9Y672 507 aa10.63□□□□□ -0.71
SS18-207ENST00000577636 CFAP47Q6ZTR5 3102 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 GOLGA6L10A0A0M3HER8 536 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 C4orf47A7E2U8 309 aa10.62□□□□□ -0.71
SS18-207ENST00000577636 M0QYV0 167 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms