RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NME8Q8N427 588 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 PQLC3Q8N755 202 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 GSTCDQ8NEC7 633 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 PCDH19Q8TAB3 1148 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 PIP4K2CQ8TBX8 421 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 USP6NLQ92738 828 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 HPDLQ96IR7 371 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SIGLEC10Q96LC7 697 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 SNRNP25Q9BV90 132 aaKnown RBP11.11□□□□□ -0.63
CCDC40-207ENST00000572253 HMGXB4Q9UGU5 601 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 TNFSF13BQ9Y275 285 aa11.11□□□□□ -0.63
CCDC40-207ENST00000572253 GCATO75600 419 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 USP1O94782 785 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 TGFB3P10600 412 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 MX2P20592 715 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 CYP2F1P24903 491 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 RGS7P49802 495 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NAB1Q13506 487 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 HSF5Q4G112 596 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 SDCCAG8Q86SQ7 713 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 CCDC33Q8N5R6 958 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 DDX50Q9BQ39 737 aaKnown RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NT5C1AQ9BXI3 368 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 KLHL4Q9C0H6 718 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NRDE2Q9H7Z3 1164 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 HESX1Q9UBX0 185 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 LACTBL1A8MY62 500 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 DPYSL4O14531 572 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 AP1G2O75843 785 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 PROZP22891 400 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 CDK7P50613 346 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 ZNF668Q96K58 619 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 DMAP1Q9NPF5 467 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 TSPAN16Q9UKR8 245 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 SIP14410 1827 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 MAP3K13O43283 966 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NCF2P19878 526 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 GSTT1P30711 240 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 FDFT1P37268 417 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NR2C2P49116 596 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 NDST1P52848 882 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 GOLGA7BQ2TAP0 167 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 CCDC14Q49A88 953 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 JADE1Q6IE81 842 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 LCLAT1Q6UWP7 414 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 FZD8Q9H461 694 aa11.1□□□□□ -0.63
CCDC40-207ENST00000572253 DHX35Q9H5Z1 703 aaKnown RBP11.1□□□□□ -0.63
CCDC40-207ENST00000572253 A0A088AWK7 358 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MDM4O15151 490 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 B4GALT5O43286 388 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 STAG3L1P0CL83 205 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 C16orf46Q6P387 395 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CYS1Q717R9 158 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MARK2Q7KZI7 788 aaKnown RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 ADGRF2Q8IZF7 708 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 POU5F2Q8N7G0 328 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PYDC1Q8WXC3 89 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 TUBGCP5Q96RT8 1024 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PTPRHQ9HD43 1115 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PRMT7Q9NVM4 692 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 SPDYE16A6NNV3 312 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 ZNF487B1APH4 448 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CCNT2O60583 730 aaKnown RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 LYPLA1O75608 230 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 RBP5P82980 135 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 LIN52Q52LA3 116 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 TEDDM1Q5T9Z0 273 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MBLAC2Q68D91 279 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PDPK2PQ6A1A2 396 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CYP4V2Q6ZWL3 525 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CCDC124Q96CT7 223 aaKnown RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 DTNBP1Q96EV8 351 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 KCNK16Q96T55 309 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 FAM124BQ9H5Z6 455 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 ASB7Q9H672 318 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CYP4F11Q9HBI6 524 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 GBA2Q9HCG7 927 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 DNAJC28Q9NX36 388 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 HACL1Q9UJ83 578 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 TXNDC9O14530 226 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PLIN3O60664 434 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 SIN3BO75182 1162 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CSDE1O75534 798 aaKnown RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 RTN3O95197 1032 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-207ENST00000572253 METTL18O95568 372 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 SETSIPP0DME0 302 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 HSPA1LP34931 641 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MAGEA3P43357 314 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PHKA2P46019 1235 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PRKG1Q13976 671 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 TMEM132DQ14C87 1099 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 KYAT1Q16773 422 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 EEPD1Q7L9B9 569 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PHC3Q8NDX5 983 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 CLMNQ96JQ2 1002 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 NAT9Q9BTE0 207 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 VRTNQ9H8Y1 702 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 XPNPEP3Q9NQH7 507 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 AFG3L2Q9Y4W6 797 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 SLC4A7Q9Y6M7 1214 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms