RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RNF19AQ9NV58 838 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 MFHAS1Q9Y4C4 1052 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 DGKIO75912 1065 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 SNAI1O95863 264 aaPredicted RBP23.55■■□□□ 1.36
VPS53-211ENST00000571805 CRHR1P34998 444 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 NBPF20Q3BBV1 942 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 TEX44Q53QW1 395 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 GLRA4Q5JXX5 417 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 MROH9Q5TGP6 573 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 RINLQ6ZS11 566 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 BZW1Q7L1Q6 419 aaKnown RBP23.55■■□□□ 1.36
VPS53-211ENST00000571805 CRYBG2Q8N1P7 616 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 MIEF2Q96C03 454 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 BATF3Q9NR55 127 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 KCNK4Q9NYG8 393 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 TAS2R1Q9NYW7 299 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 NR2E3Q9Y5X4 410 aa23.55■■□□□ 1.36
VPS53-211ENST00000571805 PLXNB2O15031 1838 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 LCP1P13796 627 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 AMPD1P23109 780 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 ADORA2BP29275 332 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 TMEM62Q0P6H9 643 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 NAA25Q14CX7 972 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 ATG16L1Q676U5 607 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 DSTYKQ6XUX3 929 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 CYS1Q717R9 158 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 GPRC5AQ8NFJ5 357 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 ZNF395Q9H8N7 513 aaPredicted RBP23.54■■□□□ 1.36
VPS53-211ENST00000571805 CDHR5Q9HBB8 845 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 I3L4J1 428 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 PDGFRBP09619 1106 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 LMO2P25791 158 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 BCAT1P54687 386 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 TMPRSS15P98073 1019 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 HEATR6Q6AI08 1181 aaKnown RBP23.54■■□□□ 1.36
VPS53-211ENST00000571805 NDUFAF2Q8N183 169 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 OLFM3Q96PB7 478 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 NMUR2Q9GZQ4 415 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 PCMTD2Q9NV79 361 aa23.54■■□□□ 1.36
VPS53-211ENST00000571805 GYG2O15488 501 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 HOXD8P13378 290 aaPredicted RBP23.53■■□□□ 1.36
VPS53-211ENST00000571805 VAV1P15498 845 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 GOT1P17174 413 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 SERPINB9P50453 376 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 CHI3L2Q15782 390 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 KHDC1Q4VXA5 237 aaKnown RBP23.53■■□□□ 1.36
VPS53-211ENST00000571805 TIFABQ6ZNK6 161 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 ALYREFQ86V81 257 aaKnown RBP23.53■■□□□ 1.36
VPS53-211ENST00000571805 NUDCD3Q8IVD9 361 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 PYROXD2Q8N2H3 581 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 DCLRE1BQ9H816 532 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 SETD4Q9NVD3 440 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 GINS2Q9Y248 185 aa23.53■■□□□ 1.36
VPS53-211ENST00000571805 STEAP4Q687X5 459 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 CATSPER4Q7RTX7 472 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 ADGRF2Q8IZF7 708 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 HTR3CQ8WXA8 447 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 ARHGEF4Q9NR80 690 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 H0Y3Z8 333 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 SNNO75324 88 aaPredicted RBP23.52■■□□□ 1.36
VPS53-211ENST00000571805 GPR32O75388 356 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 ECM2O94769 699 aaPredicted RBP23.52■■□□□ 1.36
VPS53-211ENST00000571805 ALDH1A2O94788 518 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 BPGMP07738 259 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 MMP3P08254 477 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 ESRRAP11474 423 aaPredicted RBP23.52■■□□□ 1.36
VPS53-211ENST00000571805 SMPD1P17405 629 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 TAF11Q15544 211 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 APBB1IPQ7Z5R6 666 aaPredicted RBP23.52■■□□□ 1.36
VPS53-211ENST00000571805 RAB3IL1Q8TBN0 382 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 C20orf27Q9GZN8 174 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 ARMCX1Q9P291 453 aa23.52■■□□□ 1.36
VPS53-211ENST00000571805 CAPN14A8MX76 684 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 PIRO00625 290 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 SPTLC1O15269 473 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 LMNAP02545 664 aaKnown RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 RARBP10826 455 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 GNL1P36915 607 aaPredicted RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 DENND5BQ6ZUT9 1274 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 STRADAQ7RTN6 431 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP23.51■■□□□ 1.352e-7■■■■■ 278.5
VPS53-211ENST00000571805 UNC5BQ8IZJ1 945 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 DEPDC1BQ8WUY9 529 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 TFB1MQ8WVM0 346 aaKnown RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 NAF1Q96HR8 494 aaKnown RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 GCOM2Q9BZD3 368 aaPredicted RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 NXF3Q9H4D5 531 aaKnown RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.51■■□□□ 1.35
VPS53-211ENST00000571805 PDCD11Q14690 1871 aaKnown RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 A0A0A0MRY4 1105 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 BIRC5O15392 142 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 CDK18Q07002 472 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 SNAPC2Q13487 334 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 ZNF618Q5T7W0 954 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 ARID3BQ8IVW6 561 aaPredicted RBP23.51■■□□□ 1.35
VPS53-211ENST00000571805 STKLD1Q8NE28 680 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 SPATA13Q96N96 652 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 LGMNQ99538 433 aa23.51■■□□□ 1.35
VPS53-211ENST00000571805 CCDC195A0A1B0GUA6 201 aa23.5■■□□□ 1.35
VPS53-211ENST00000571805 WDR27A2RRH5 827 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms