RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 NNTQ13423 1086 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 RNF43Q68DV7 783 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 HTR3DQ70Z44 454 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 ZNF683Q8IZ20 524 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 CELF5Q8N6W0 485 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 NIPA2Q8N8Q9 360 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 TDRD5Q8NAT2 981 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 MSANTD4Q8NCY6 345 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 CCDC112Q8NEF3 446 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 SLC35G2Q8TBE7 412 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 ELSPBP1Q96BH3 223 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 GCNAQ96QF7 691 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 PEBP4Q96S96 227 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 PRMT1Q99873 361 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 FAM83CQ9BQN1 747 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 NUP85Q9BW27 656 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 LINC00597Q9H2U6 94 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 DEF6Q9H4E7 631 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 KCNK12Q9HB15 430 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 HPS4Q9NQG7 708 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 OLA1Q9NTK5 396 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 PARVAQ9NVD7 372 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 OBP2AQ9NY56 170 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 CFAP97Q9P2B7 532 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 MYO1AQ9UBC5 1043 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 LIMD1Q9UGP4 676 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 RASAL2Q9UJF2 1139 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 STOML2Q9UJZ1 356 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 NEU3Q9UQ49 428 aa9.68□□□□□ -0.86
VPS35-211ENST00000569950 HBS1LQ9Y450 684 aaKnown RBP9.68□□□□□ -0.86
VPS35-211ENST00000569950 SLC12A8A0AV02 714 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 BTNL10A8MVZ5 291 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 M0QYT0 321 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 NARSO43776 548 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 LRCH4O75427 683 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 PDGFRAP16234 1089 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 GPD1P21695 349 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 IL1R2P27930 398 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SLC6A4P31645 630 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 CYLC1P35663 651 aaPredicted RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 AVPR1AP37288 418 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SULT1E1P49888 294 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SNX16P57768 344 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 AAK1Q2M2I8 961 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 EML3Q32P44 896 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 FAM133BQ5BKY9 247 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 ZC3H12AQ5D1E8 599 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 C10orf76Q5T2E6 689 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 PIK3R6Q5UE93 754 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 TXNRD3NBQ6F5E7 133 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 STRADAQ7RTN6 431 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 MFSD6LQ8IWD5 586 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS35-211ENST00000569950 BBS7Q8IWZ6 715 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 REXO1L1PQ8IX06 675 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SLC44A3Q8N4M1 653 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 RFFLQ8WZ73 363 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 TRIM11Q96F44 468 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 ZFYVE19Q96K21 471 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 CDK5RAP1Q96SZ6 601 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 CNPY3Q9BT09 278 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SELENOOQ9BVL4 669 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 SLITRK6Q9H5Y7 841 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 KIF9Q9HAQ2 790 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 ARHGEF38Q9NXL2 777 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 AGO1Q9UL18 857 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 PYCARDQ9ULZ3 195 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 TLR6Q9Y2C9 796 aa9.67□□□□□ -0.86
VPS35-211ENST00000569950 MYO18AQ92614 2054 aaKnown RBP9.67□□□□□ -0.86
VPS35-211ENST00000569950 NUP205Q92621 2012 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 MUC22E2RYF6 1773 aaPredicted RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 A0A0A6YYK5 440 aaPredicted RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 E2F8A0AVK6 867 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 HMBSP08397 361 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 IRF1P10914 325 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 CHRM1P11229 460 aaPredicted RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 IRAK1P51617 712 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 SGSHP51688 502 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 TBX4P57082 545 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 TAS2R40P59535 323 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ATP11AP98196 1134 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 SLC25A11Q02978 314 aaKnown RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 SEMA3BQ13214 749 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 GRM2Q14416 872 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 PPP2R5DQ14738 602 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 MANEALQ5VSG8 457 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 TRIM68Q6AZZ1 485 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ZNF662Q6ZS27 426 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 RSRC2Q7L4I2 434 aaKnown RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 CCDC185Q8N715 623 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 KIAA1958Q8N8K9 716 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 LRRC57Q8N9N7 239 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ZNF564Q8TBZ8 553 aaPredicted RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 BPIFB1Q8TDL5 484 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 RNF139Q8WU17 664 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 FAM172AQ8WUF8 416 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 CTNNBL1Q8WYA6 563 aaPredicted RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 PLD4Q96BZ4 506 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 SERPINB11Q96P15 392 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 TRIM62Q9BVG3 475 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms