RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 YKT6O15498 198 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 AKAP8O43823 692 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 KLHL41O60662 606 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CBFA2T3O75081 653 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 N4BP1O75113 896 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 SERPINB7O75635 380 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TCEA3O75764 348 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ARIH2O95376 493 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 LCA5LO95447 670 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ZFYP08048 801 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 ITGA2BP08514 1039 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 GHRP10912 638 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CYP2C9P11712 490 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 DDX5P17844 614 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 EIF2S2P20042 333 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 MX1P20591 662 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SP100P23497 879 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 IL32P24001 234 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PSMA4P25789 261 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 TMOD1P28289 359 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TKTP29401 623 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 HMOX2P30519 316 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PRKAR1BP31321 381 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 HPDP32754 393 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 MCM7P33993 719 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PSMC2P35998 433 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 HAAOP46952 286 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TRAPPC10P48553 1259 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NR2C2P49116 596 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 RABGGTBP53611 331 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PLTPP55058 493 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 GSDMDP57764 484 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 MRPS25P82663 173 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 ABHD18Q0P651 414 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 MRPL49Q13405 166 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 RAPGEF1Q13905 1077 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SEMA3AQ14563 771 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CASP8Q14790 479 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NR1D2Q14995 579 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NOMO1Q15155 1222 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ARL13BQ3SXY8 428 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 KRT71Q3SY84 523 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 LACTB2Q53H82 288 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 PPP4R4Q6NUP7 873 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 DUS1LQ6P1R4 473 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 FAM180AQ6UWF9 173 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ZNF600Q6ZNG1 722 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PDZD4Q76G19 769 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 RUFY3Q7L099 469 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SLC51BQ86UW2 128 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 VPS36Q86VN1 386 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PALB2Q86YC2 1186 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 LRRC8AQ8IWT6 810 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CNTD1Q8N815 330 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NOA1Q8NC60 698 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 CCDC148Q8NFR7 591 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CPT1CQ8TCG5 803 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 BCAS4Q8TDM0 211 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TSPEARQ8WU66 669 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 IPCEF1Q8WWN9 437 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 STARD8Q92502 1023 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 FATE1Q969F0 183 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 INTS12Q96CB8 462 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 VPS50Q96JG6 964 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 TSGA13Q96PP4 275 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SERINC2Q96SA4 455 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 AIFM2Q9BRQ8 373 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SIKE1Q9BRV8 207 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ERP44Q9BS26 406 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ADI1Q9BV57 179 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CARD6Q9BX69 1037 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NUF2Q9BZD4 464 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CCSER1Q9C0I3 900 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 MIS12Q9H081 205 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NAT10Q9H0A0 1025 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 GLT8D2Q9H1C3 349 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 VCXQ9H320 206 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 DNAJC18Q9H819 358 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 KAT14Q9H8E8 782 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SCPEP1Q9HB40 452 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ATP8A2Q9NTI2 1148 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CCM2LQ9NUG4 571 aaPredicted RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 SEPT11Q9NVA2 429 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 HAUS2Q9NVX0 235 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PPP1R14DQ9NXH3 145 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 GPRC5DQ9NZD1 345 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 CEP72Q9P209 647 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SEC63Q9UGP8 760 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 HMGXB4Q9UGU5 601 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SAP30BPQ9UHR5 308 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 L1RE1Q9UN81 338 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 DNM3Q9UQ16 869 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 PA2G4Q9UQ80 394 aaKnown RBP3.43□□□□□ -1.86
VPS35-208ENST00000568612 RABGAP1Q9Y3P9 1069 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NFE2L3Q9Y4A8 694 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 NOX1Q9Y5S8 564 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 SNX5Q9Y5X3 404 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 COMMD3-BMI1R4GMX3 469 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 FHOD3Q2V2M9 1422 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms