RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DDX20Q9UHI6 824 aaKnown RBP3.39□□□□□ -1.87
VPS35-207ENST00000568191 VPS51Q9UID3 782 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 G3BP2Q9UN86 482 aaKnown RBP3.39□□□□□ -1.87
VPS35-207ENST00000568191 CACNA1IQ9P0X4 2223 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 C2CD4BA6NLJ0 364 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ZSCAN9O15535 394 aaPredicted RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 ALPLP05186 524 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 TGFB3P10600 412 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 DRD1P21728 446 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ATICP31939 592 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 THBS4P35443 961 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 SEMA3BQ13214 749 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 SEMA5AQ13591 1074 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 CBFBQ13951 182 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 KCNJ12Q14500 433 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 GRM3Q14832 879 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 LEXMQ3ZCV2 418 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 MRNIPQ6NTE8 343 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 CRELD2Q6UXH1 353 aaPredicted RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 RBM44Q6ZP01 1051 aaKnown RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 C9orf47Q6ZRZ4 202 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 TRAPPC11Q7Z392 1133 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 KRT78Q8N1N4 520 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ATP11CQ8NB49 1132 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ZNF548Q8NEK5 533 aaPredicted RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 AKAP1Q92667 903 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS35-207ENST00000568191 TRMT61AQ96FX7 289 aaKnown RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 KAZALD1Q96I82 304 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 TTLL2Q9BWV7 592 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ERVK-5Q9HDB9 667 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 SEMA4BQ9NPR2 832 aaPredicted RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 PAPOLBQ9NRJ5 636 aaKnown RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 RXFP3Q9NSD7 469 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ASNSD1Q9NWL6 643 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 OBP2AQ9NY56 170 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ZNF580Q9UK33 172 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 VPS4AQ9UN37 437 aa3.38□□□□□ -1.87
VPS35-207ENST00000568191 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.38□□□□□ -1.87
VPS35-207ENST00000568191 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 DPPA5A6NC42 116 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 A6NNZ2 444 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 PQBP1O60828 265 aaKnown RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 ENO1P06733 434 aaKnown RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 MYL4P12829 197 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 HOXD12P35452 270 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 IGHMBP2P38935 993 aaKnown RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 CDKN2AP42771 156 aaKnown RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 LINC00205P59089 165 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 PRTGQ2VWP7 1150 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 P3H1Q32P28 736 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 AASDHQ4L235 1098 aaPredicted RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 GRHL2Q6ISB3 625 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 PIP4P1Q86T03 277 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 CCDC33Q8N5R6 958 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 FAM47BQ8NA70 645 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 ADAMTS15Q8TE58 950 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 CENPIQ92674 756 aaPredicted RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 TSR2Q969E8 191 aaKnown RBP3.37□□□□□ -1.87
VPS35-207ENST00000568191 SLC25A28Q96A46 364 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 GRAMD1AQ96CP6 724 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 LRRC46Q96FV0 321 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 P2RY11Q96G91 374 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 SELENOOQ9BVL4 669 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 TM2D2Q9BX73 214 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 HIPK2Q9H2X6 1198 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 FZD3Q9NPG1 666 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 ABHD10Q9NUJ1 306 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 SEMA5BQ9P283 1151 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 PCDHGB6Q9Y5F9 930 aa3.37□□□□□ -1.87
VPS35-207ENST00000568191 CLCA1A8K7I4 914 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 CTIFO43310 598 aaKnown RBP3.36□□□□□ -1.87
VPS35-207ENST00000568191 VIPP01282 170 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 AKR1A1P14550 325 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SLC5A2P31639 672 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SLC8A1P32418 973 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 PBX1P40424 430 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 THBS3P49746 956 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 RAE1P78406 368 aaKnown RBP3.36□□□□□ -1.87
VPS35-207ENST00000568191 MTAPQ13126 283 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 DLGAP5Q15398 846 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 RRAGBQ5VZM2 374 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 WDR75Q8IWA0 830 aaKnown RBP3.36□□□□□ -1.87
VPS35-207ENST00000568191 ACRBPQ8NEB7 543 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 OR52L2PQ8NGH6 319 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 TTC8Q8TAM2 541 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 CELF1Q92879 486 aaKnown RBP3.36□□□□□ -1.87
VPS35-207ENST00000568191 SNX27Q96L92 541 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 VPS33BQ9H267 617 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SAP30LQ9HAJ7 183 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 KLHL42Q9P2K6 505 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 ANAPC4Q9UJX5 808 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SLC8A2Q9UPR5 921 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 CORO2BQ9UQ03 480 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 PCDHB2Q9Y5E7 798 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SPATA31A5Q5VU36 1347 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 EMSYQ7Z589 1322 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SPATA31A7Q8IWB4 1347 aa3.36□□□□□ -1.87
VPS35-207ENST00000568191 SLC22A23A1A5C7 686 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 LACTBL1A8MY62 500 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 RRHO14718 337 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms