RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PSMG1O95456 288 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 TRUB2O95900 331 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 MYCP01106 439 aaPredicted RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 SKIP12755 728 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 MIPP30301 263 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 SESN3P58005 492 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 TFAMQ00059 246 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 ROR1Q01973 937 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 TMED1Q13445 227 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 KCNJ11Q14654 390 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 IRGCQ6NXR0 463 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 DARS2Q6PI48 645 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 CDR2LQ86X02 465 aaPredicted RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 XYLT1Q86Y38 959 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 EMC1Q8N766 993 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 DNAJB3Q8WWF6 145 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 STMN2Q93045 179 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 ACO2Q99798 780 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 FZD8Q9H461 694 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 METTL5Q9NRN9 209 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 KCNK4Q9NYG8 393 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 STX18Q9P2W9 335 aaKnown RBP13.71□□□□□ -0.21
VPS4A-204ENST00000566354 TJP2Q9UDY2 1190 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 ZNF232Q9UNY5 417 aa13.71□□□□□ -0.21
VPS4A-204ENST00000566354 EIF4E1BA6NMX2 242 aaKnown RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 FCHO1O14526 889 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 CAPN9O14815 690 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 KRT37O76014 449 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 NPTXRO95502 500 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 HOXC8P31273 242 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 PHKA2P46019 1235 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 NOMO1Q15155 1222 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 LGSNQ5TDP6 509 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 LHX8Q68G74 356 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 DNAJC5GQ8N7S2 189 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 HSPH1Q92598 858 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 APBB2Q92870 758 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 PRR11Q96HE9 360 aaPredicted RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 SRPK1Q96SB4 655 aaKnown RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 CPXM1Q96SM3 734 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 YIPF3Q9GZM5 350 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 VCXQ9H320 206 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 CDHR5Q9HBB8 845 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 ZNF180Q9UJW8 692 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 USP18Q9UMW8 372 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 SMIM35A0A1B0GVV1 85 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 I3L4J1 428 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 ACKR2O00590 384 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 KRT36O76013 467 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 TNNC2P02585 160 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 SNRPAP09012 282 aaKnown RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 CST5P28325 142 aaPredicted RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 PEX19P40855 299 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 TFDP2Q14188 446 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 FAM47CQ5HY64 1035 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 LRRC74BQ6ZQY2 392 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 SLC4A11Q8NBS3 891 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 SCG3Q8WXD2 468 aaKnown RBP13.7□□□□□ -0.22
VPS4A-204ENST00000566354 C7orf26Q96N11 449 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 NFKBIZQ9BYH8 718 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 ASNSD1Q9NWL6 643 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 ZNF212Q9UDV6 495 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 GTF2IRD1Q9UHL9 959 aa13.7□□□□□ -0.22
VPS4A-204ENST00000566354 FAM237BA0A1B0GVD1 139 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TRIM49D1C9J1S8 452 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TRDMT1O14717 391 aaKnown RBP13.69□□□□□ -0.22
VPS4A-204ENST00000566354 MAGEC1O60732 1142 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TBX10O75333 385 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ENDOD1O94919 500 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 PGM1P36871 562 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 RAP1GDS1P52306 607 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 MXRA7P84157 204 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 POU5F1BQ06416 359 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TAF5Q15542 800 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 AMHR2Q16671 573 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 GDF6Q6KF10 455 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TMEM154Q6P9G4 183 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 RNF180Q86T96 592 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TMPRSS6Q8IU80 811 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 PPFIBP2Q8ND30 876 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 NRG4Q8WWG1 115 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 FAF2Q96CS3 445 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ANKRD36BP1Q96IX9 119 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 SYT15Q9BQS2 421 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 NMUR2Q9GZQ4 415 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ADAMTS10Q9H324 1103 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 PAK5Q9P286 719 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 NXF1Q9UBU9 619 aaKnown RBP13.69□□□□□ -0.22
VPS4A-204ENST00000566354 PLLPQ9Y342 182 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 FRMPD3Q5JV73 1810 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 F8W8V4 182 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 B4GALT4O60513 344 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 GPR32O75388 356 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ERBB2P04626 1255 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 GABRB2P47870 512 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 AP1B1Q10567 949 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ATG16L1Q676U5 607 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 TTC7BQ86TV6 843 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 ZC3H18Q86VM9 953 aaKnown RBP13.69□□□□□ -0.22
VPS4A-204ENST00000566354 PDCD7Q8N8D1 485 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms