RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 TMX3Q96JJ7 454 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 TMEM245Q9H330 911 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 PANK4Q9NVE7 773 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 COMMD8Q9NX08 183 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 NXF1Q9UBU9 619 aaKnown RBP10.92□□□□□ -0.66
SF3B3-204ENST00000563739 DNMT3LQ9UJW3 386 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 SCML2Q9UQR0 700 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 PCDHB13Q9Y5F0 798 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 COL12A1Q99715 3063 aa10.92□□□□□ -0.66
SF3B3-204ENST00000563739 WNT9AO14904 365 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 KIAA0391O15091 583 aaKnown RBP10.91□□□□□ -0.66
SF3B3-204ENST00000563739 TSPAN3O60637 253 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 IDEP14735 1019 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 GRK6P43250 576 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 CCT8P50990 548 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 AFF3P51826 1226 aaKnown RBP10.91□□□□□ -0.66
SF3B3-204ENST00000563739 MAP3K7CLP57077 242 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 TNNC1P63316 161 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 RTP5Q14D33 572 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 E2F4Q16254 413 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 SDE2Q6IQ49 451 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 FBXL19Q6PCT2 694 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 KLHDC10Q6PID8 442 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 BHLHA9Q7RTU4 235 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 ERICH1Q86X53 443 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 GATAD2AQ86YP4 633 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 C12orf29Q8N999 325 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 RASSF8Q8NHQ8 419 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 TSC1Q92574 1164 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 IGSF8Q969P0 613 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 FCRL3Q96P31 734 aaPredicted RBP10.91□□□□□ -0.66
SF3B3-204ENST00000563739 PCED1AQ9H1Q7 454 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 FAM49BQ9NUQ9 324 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 SERGEFQ9UGK8 458 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 SRPRBQ9Y5M8 271 aaKnown RBP10.91□□□□□ -0.66
SF3B3-204ENST00000563739 BOD1L1Q8NFC6 3051 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 TEX15Q9BXT5 2789 aa10.91□□□□□ -0.66
SF3B3-204ENST00000563739 NBPF19A0A087WUL8 3843 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 A0A1B0GTQ1 180 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 EIF4E1BA6NMX2 242 aaKnown RBP10.9□□□□□ -0.66
SF3B3-204ENST00000563739 LRRIQ3A6PVS8 624 aaPredicted RBP10.9□□□□□ -0.66
SF3B3-204ENST00000563739 PYCARD-AS1I3L0S3 204 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 CLIC2O15247 247 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 BMP15O95972 392 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 ASPAP45381 313 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 ZNF132P52740 706 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 CLDN10P78369 228 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 TLE3Q04726 772 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 STARD3Q14849 445 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 SURF1Q15526 300 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 PRAMEF14Q5SWL7 426 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 C1orf220Q5T0J3 134 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 SV2BQ7L1I2 683 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 TMPRSS12Q86WS5 348 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 CRYBG2Q8N1P7 616 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 RDH13Q8NBN7 331 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 LSM14AQ8ND56 463 aaKnown RBP10.9□□□□□ -0.66
SF3B3-204ENST00000563739 ZNF507Q8TCN5 953 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 WFDC5Q8TCV5 224 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 PRCCQ92733 491 aaPredicted RBP10.9□□□□□ -0.66
SF3B3-204ENST00000563739 CCDC127Q96BQ5 260 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 NXPE2Q96DL1 559 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 MYO19Q96H55 970 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 NUP58Q9BVL2 599 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 MTG2Q9H4K7 406 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 ELOVL2Q9NXB9 296 aa10.9□□□□□ -0.66
SF3B3-204ENST00000563739 A0A1W2PR77 199 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 C4BPAP04003 597 aaKnown RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 RARGP13631 454 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 HOXD9P28356 352 aaPredicted RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 HLA-FP30511 346 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 OXTRP30559 389 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 ATP5C1P36542 298 aaKnown RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 CYP2J2P51589 502 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 SGSHP51688 502 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 KIF11P52732 1056 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 NDST1P52848 882 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 RPS14P62263 151 aaKnown RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 TARDBPQ13148 414 aaKnown RBP eCLIP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 KCNJ12Q14500 433 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 CCDC157Q569K6 752 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 HES3Q5TGS1 186 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 RRAGBQ5VZM2 374 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 SPOPLQ6IQ16 392 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 NUDT18Q6ZVK8 323 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 BRAPQ7Z569 592 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 ANKS1BQ7Z6G8 1248 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 KIAA0907Q7Z7F0 614 aaPredicted RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 OR2T3Q8NH03 318 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 SAP25Q8TEE9 199 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 SNX19Q92543 992 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 SLC6A18Q96N87 628 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 MED10Q9BTT4 135 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 LHX5Q9H2C1 402 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 CAAP1Q9H8G2 361 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 TLR8Q9NR97 1041 aaKnown RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 AGO1Q9UL18 857 aaKnown RBP10.89□□□□□ -0.67
SF3B3-204ENST00000563739 PCDHGA1Q9Y5H4 931 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 USP3Q9Y6I4 520 aa10.89□□□□□ -0.67
SF3B3-204ENST00000563739 ATP8B3O60423 1300 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms