RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SMARCE1Q969G3 411 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 CCDC34Q96HJ3 373 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 CAMK1GQ96NX5 476 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 DUSP9Q99956 384 aaKnown RBP19.94■□□□□ 0.78
VPS35-202ENST00000561713 DNMT3LQ9UJW3 386 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 STARD13Q9Y3M8 1113 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 SMG1Q96Q15 3661 aaKnown RBP19.94■□□□□ 0.78
VPS35-202ENST00000561713 CKAP5Q14008 2032 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 FAM221BA6H8Z2 402 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 H0Y626 953 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 SLC16A3O15427 465 aaKnown RBP19.93■□□□□ 0.78
VPS35-202ENST00000561713 TRIM16O95361 564 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 RABEPKQ7Z6M1 372 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 ZC3H3Q8IXZ2 948 aaKnown RBP19.93■□□□□ 0.78
VPS35-202ENST00000561713 CHPFQ8IZ52 775 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 TRIML1Q8N9V2 468 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 IPO4Q8TEX9 1081 aaKnown RBP19.93■□□□□ 0.78
VPS35-202ENST00000561713 TMEM176AQ96HP8 235 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 HSPA12BQ96MM6 686 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 SLC6A17Q9H1V8 727 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 CD93Q9NPY3 652 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 RAD54BQ9Y620 910 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 USP3Q9Y6I4 520 aa19.93■□□□□ 0.78
VPS35-202ENST00000561713 PRRT4C9JH25 899 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 STX10O60499 249 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 ZNF217O75362 1048 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 KLKB1P03952 638 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 CAPNS1P04632 268 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 CD44P16070 742 aaKnown RBP19.92■□□□□ 0.78
VPS35-202ENST00000561713 RDXP35241 583 aaKnown RBP19.92■□□□□ 0.78
VPS35-202ENST00000561713 CUL2Q13617 745 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 RAB44Q7Z6P3 723 aaPredicted RBP19.92■□□□□ 0.78
VPS35-202ENST00000561713 DNAAF2Q9NVR5 837 aaKnown RBP19.92■□□□□ 0.78
VPS35-202ENST00000561713 CACNA2D2Q9NY47 1150 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 MARK1Q9P0L2 795 aa19.92■□□□□ 0.78
VPS35-202ENST00000561713 MUC22E2RYF6 1773 aaPredicted RBP19.92■□□□□ 0.78
VPS35-202ENST00000561713 FASNP49327 2511 aaKnown RBP19.91■□□□□ 0.78
VPS35-202ENST00000561713 SH3BP5O60239 455 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 SMC2O95347 1197 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 RALAP11233 206 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 CD19P15391 556 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 CORO1AP31146 461 aaKnown RBP19.91■□□□□ 0.78
VPS35-202ENST00000561713 MCCD1P59942 119 aaPredicted RBP19.91■□□□□ 0.78
VPS35-202ENST00000561713 BECN1Q14457 450 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 ACAP1Q15027 740 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 ARHGAP17Q68EM7 881 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 SDE2Q6IQ49 451 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 KLHDC10Q6PID8 442 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 SLC35C1Q96A29 364 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 GSDMAQ96QA5 445 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 XPO6Q96QU8 1125 aaKnown RBP19.91■□□□□ 0.78
VPS35-202ENST00000561713 ULBP1Q9BZM6 244 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 MAN1B1Q9UKM7 699 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 TSPAN16Q9UKR8 245 aa19.91■□□□□ 0.78
VPS35-202ENST00000561713 ZBTB24O43167 697 aaPredicted RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 CALCAP01258 141 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 SYPP08247 313 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 PLA2G4AP47712 749 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 DGKGP49619 791 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 TKTL1P51854 596 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 FKBP3Q00688 224 aaKnown RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 PDE4CQ08493 712 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 ADIGQ0VDE8 80 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 TRIP6Q15654 476 aaKnown RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 ZNF423Q2M1K9 1284 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 PLEKHG6Q3KR16 790 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 COBLL1Q53SF7 1204 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 KLHL10Q6JEL2 608 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 RSRC2Q7L4I2 434 aaKnown RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 BHLHA9Q7RTU4 235 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 RGL4Q8IZJ4 473 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 ZNF419Q96HQ0 510 aaPredicted RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 GABRG3Q99928 467 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 DNAI2Q9GZS0 605 aa19.9■□□□□ 0.78
VPS35-202ENST00000561713 ARMCX3Q9UH62 379 aaPredicted RBP19.9■□□□□ 0.78
VPS35-202ENST00000561713 WASH3PC4AMC7 463 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 GJB3O75712 270 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 MAOBP27338 520 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 PSEN1P49768 467 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 YWHAGP61981 247 aaKnown RBP eCLIP19.89■□□□□ 0.77
VPS35-202ENST00000561713 LRRC63Q05C16 580 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 RAB41Q5JT25 222 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 PROSER1Q86XN7 944 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 UBR7Q8N806 425 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 SPATA20Q8TB22 786 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 UBA3Q8TBC4 463 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 KAT5Q92993 513 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 MRGPRX1Q96LB2 322 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 CLIC5Q9NZA1 410 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 MARCH2Q9P0N8 246 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 WDR35Q9P2L0 1181 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 COQ4Q9Y3A0 265 aa19.89■□□□□ 0.77
VPS35-202ENST00000561713 SLC12A8A0AV02 714 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 PIK3R2O00459 728 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 NDUFS2O75306 463 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 CISD3P0C7P0 127 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 BCAT1P54687 386 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 NUCB2P80303 420 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 SLC14A1Q13336 389 aa19.88■□□□□ 0.77
VPS35-202ENST00000561713 HNRNPDQ14103 355 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms