RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PLK2Q9NYY3 685 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 SLC27A6Q9Y2P4 619 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 LUC7L2Q9Y383 392 aaKnown RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 PCDHGB1Q9Y5G3 927 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 PIAS2O75928 621 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 HOXC6P09630 235 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 CHRNB1P11230 501 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 TCEA1P23193 301 aaKnown RBP3.93□□□□□ -1.78
SCFD1-218ENST00000556256 RFX2P48378 723 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 STK3Q13188 491 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 DNASE1L3Q13609 305 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 GRHL2Q6ISB3 625 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 CLEC9AQ6UXN8 241 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 MICU3Q86XE3 530 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 UEVLDQ8IX04 471 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 TMEM174Q8WUU8 243 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 INPP5DQ92835 1189 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 EME1Q96AY2 570 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 ZMAT3Q9HA38 289 aaKnown RBP3.93□□□□□ -1.78
SCFD1-218ENST00000556256 SAP30LQ9HAJ7 183 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 MYO6Q9UM54 1294 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 THRAP3Q9Y2W1 955 aaKnown RBP3.93□□□□□ -1.78
SCFD1-218ENST00000556256 SCN5AQ14524 2016 aa3.93□□□□□ -1.78
SCFD1-218ENST00000556256 A0A1B0GUV1 79 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 PKMP14618 531 aaKnown RBP3.92□□□□□ -1.78
SCFD1-218ENST00000556256 EN2P19622 333 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-218ENST00000556256 HTR1BP28222 390 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 VPS41P49754 854 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 ERVFC1-1P60608 527 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 ARHGEF7Q14155 803 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 IZUMO4Q1ZYL8 232 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 PRAMEF19Q5SWL8 479 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 PRSS57Q6UWY2 283 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 DAAM2Q86T65 1068 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 HIST1H2AAQ96QV6 131 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 SEZ6LQ9BYH1 1024 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 AAMDCQ9H7C9 122 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 METTL14Q9HCE5 456 aaKnown RBP3.92□□□□□ -1.78
SCFD1-218ENST00000556256 KLHL42Q9P2K6 505 aa3.92□□□□□ -1.78
SCFD1-218ENST00000556256 ZNF335Q9H4Z2 1342 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-218ENST00000556256 FAM227AF5H4B4 570 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 ALDH1L1O75891 902 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 RASSF9O75901 435 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 TMEM225BP0DP42 221 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 KLRC1P26715 233 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 SOX2P48431 317 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 RAE1P78406 368 aaKnown RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 MCL1Q07820 350 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 ZNF267Q14586 743 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 CNGA3Q16281 694 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 FAM76BQ5HYJ3 339 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 WASHC2DQ5SRD0 308 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 C6orf10Q5SRN2 563 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 DENND1CQ8IV53 801 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 ARL14EPQ8N8R7 260 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 PRR26Q8N8Z3 221 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 CELF1Q92879 486 aaKnown RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 NUP88Q99567 741 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 WDR83Q9BRX9 315 aaKnown RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 TM6SF1Q9BZW5 370 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 DHX36Q9H2U1 1008 aaKnown RBP3.91□□□□□ -1.78
SCFD1-218ENST00000556256 SLC12A5Q9H2X9 1139 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 ASNSD1Q9NWL6 643 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 GABBR1Q9UBS5 961 aa3.91□□□□□ -1.78
SCFD1-218ENST00000556256 CLEC18AA5D8T8 446 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 PYCARD-AS1I3L0S3 204 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 PRYO14603 147 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 SNX2O60749 519 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 OFD1O75665 1012 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 S100BP04271 92 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-218ENST00000556256 VCAM1P19320 739 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 NEK2P51955 445 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 ART1P52961 327 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 COPAP53621 1224 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 CLCA4Q14CN2 919 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 TTF1Q15361 905 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-218ENST00000556256 KIF26BQ2KJY2 2108 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 MRGPRG-AS1Q2M3A8 158 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 ANO6Q4KMQ2 910 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 ODR4Q5SWX8 454 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 ASPHD1Q5U4P2 390 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 HIST2H2BCQ6DN03 193 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 SWSAP1Q6NVH7 229 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 B3GNT9Q6UX72 402 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.9□□□□□ -1.79
SCFD1-218ENST00000556256 CLEC18CQ8NCF0 446 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 DIS3LQ8TF46 1054 aaKnown RBP3.9□□□□□ -1.79
SCFD1-218ENST00000556256 CDT1Q9H211 546 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 CDCP1Q9H5V8 836 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 TCF7L1Q9HCS4 588 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 SIRT3Q9NTG7 399 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-218ENST00000556256 KCNG2Q9UJ96 466 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 UTS2RQ9UKP6 389 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 PAXBP1Q9Y5B6 917 aa3.9□□□□□ -1.79
SCFD1-218ENST00000556256 DOCK7Q96N67 2140 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 MBD3L4A6NDZ8 208 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 MBD3L3A6NE82 208 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-218ENST00000556256 TBX3O15119 743 aa3.89□□□□□ -1.79
SCFD1-218ENST00000556256 UBXN7O94888 489 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms