RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CHD7Q9P2D1 2997 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 RANBP2P49792 3224 aaKnown RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 GOLGA6L10A0A0M3HER8 536 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 H3BRJ5 948 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 SOX1O00570 391 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 ENC1O14682 589 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 MSI1O43347 362 aaKnown RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 COCHO43405 550 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 LATS1O95835 1130 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 GLP2RO95838 553 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 MOCS2O96007 188 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 OAS1P00973 400 aaKnown RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 F11P03951 625 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 HTR7P34969 479 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 PAFAH1B1P43034 410 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 HDAC4P56524 1084 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 COPS2P61201 443 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 ADAM15Q13444 863 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 KCNC3Q14003 757 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 PDK2Q15119 407 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 TEAD2Q15562 447 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 SMTNL2Q2TAL5 461 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 ERMARDQ5T6L9 678 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 LRRC31Q6UY01 552 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 KATNAL2Q8IYT4 538 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 HS6ST3Q8IZP7 471 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 DEFB123Q8N688 67 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 MAIP1Q8WWC4 291 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 CENPIQ92674 756 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 HES6Q96HZ4 224 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 PBKQ96KB5 322 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 BTN2A3PQ96KV6 586 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 CALN1Q9BXU9 219 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 MAK16Q9BXY0 300 aaKnown RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 TKTL2Q9H0I9 626 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 ADAM7Q9H2U9 754 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 GOLPH3Q9H4A6 298 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 PIGVQ9NUD9 493 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 STIM2Q9P246 746 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 DNMT3BQ9UBC3 853 aaKnown RBP11.63□□□□□ -0.55
SHMT2-220ENST00000555634 SFMBT1Q9UHJ3 866 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 SNX12Q9UMY4 172 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 PCDHA3Q9Y5H8 950 aa11.63□□□□□ -0.55
SHMT2-220ENST00000555634 NOTCH4Q99466 2003 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 DOCK4Q8N1I0 1966 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 C2orf78A6NCI8 922 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 CES2O00748 559 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 LINC01565O15544 149 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 DAPK3O43293 454 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 TADA3O75528 432 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 URI1O94763 535 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 ENDOD1O94919 500 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 ZRANB2O95218 330 aaKnown RBP eCLIP11.62□□□□□ -0.551e-7■□□□□ 9.4
SHMT2-220ENST00000555634 IGLV3-25P01717 112 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 FYNP06241 537 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 HMBSP08397 361 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 IRF1P10914 325 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 GTF2F1P35269 517 aaKnown RBP eCLIP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 CXCR3P49682 368 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 SLC25A11Q02978 314 aaKnown RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 SCAPQ12770 1279 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 PPP6R3Q5H9R7 873 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 TXNDC8Q6A555 127 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 TRNP1Q6NT89 227 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 GAREM2Q75VX8 874 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 VSIG1Q86XK7 387 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 CCDC117Q8IWD4 279 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 RCOR2Q8IZ40 523 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 C12orf76Q8N812 135 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 TTC16Q8NEE8 873 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 EXD1Q8NHP7 514 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 SHKBP1Q8TBC3 707 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 KHSRPQ92945 711 aaKnown RBP eCLIP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 ZNF707Q96C28 371 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 WDR24Q96S15 920 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 SNRNP25Q9BV90 132 aaKnown RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 APOL5Q9BWW9 433 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 DHX35Q9H5Z1 703 aaKnown RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 IL21Q9HBE4 155 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 OSER1Q9NX31 292 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 GDE1Q9NZC3 331 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 RCOR3Q9P2K3 495 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 RNF14Q9UBS8 474 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 CD207Q9UJ71 328 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 NUDT5Q9UKK9 219 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 PACSIN2Q9UNF0 486 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 CPQQ9Y646 472 aa11.62□□□□□ -0.55
SHMT2-220ENST00000555634 ZFP37Q9Y6Q3 630 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-220ENST00000555634 DOCK6Q96HP0 2047 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 F5H5T6 163 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 PGRMC1O00264 195 aaKnown RBP11.61□□□□□ -0.55
SHMT2-220ENST00000555634 SLC9A3R1O14745 358 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-220ENST00000555634 TBX10O75333 385 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 PAPLNO95428 1278 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 OLFM2O95897 454 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 ATP1A1P05023 1023 aaKnown RBP11.61□□□□□ -0.55
SHMT2-220ENST00000555634 PRLRP16471 622 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 CORO1AP31146 461 aaKnown RBP11.61□□□□□ -0.55
SHMT2-220ENST00000555634 CDH6P55285 790 aa11.61□□□□□ -0.55
SHMT2-220ENST00000555634 TPI1P60174 286 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms