RNA–Protein interactions for RNA: ENST00000554879.5

PCNX1-209, Transcript of pecanex 1, humanhuman

TSL 1 (best)

Gene PCNX1, Length 4,431 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-209ENST00000554879 SMNDC1O75940 238 aaKnown RBP eCLIP17.13■□□□□ 0.33
PCNX1-209ENST00000554879 EPHB2P29323 1055 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 HADHBP55084 474 aaKnown RBP17.13■□□□□ 0.33
PCNX1-209ENST00000554879 SKOR1P84550 965 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 C6orf118Q5T5N4 469 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 SYDE1Q6ZW31 735 aaPredicted RBP17.13■□□□□ 0.33
PCNX1-209ENST00000554879 DCP1BQ8IZD4 617 aaKnown RBP17.13■□□□□ 0.33
PCNX1-209ENST00000554879 USP33Q8TEY7 942 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.13■□□□□ 0.335e-6■□□□□ 8.9
PCNX1-209ENST00000554879 SH3GL2Q99962 352 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 DFFAO00273 331 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 MTA2O94776 668 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 INHBAP08476 426 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 AMPD1P23109 780 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 NEUROG2Q9H2A3 272 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 WDCPQ9H6R7 721 aa17.13■□□□□ 0.33
PCNX1-209ENST00000554879 XPO7Q9UIA9 1087 aaKnown RBP17.13■□□□□ 0.33
PCNX1-209ENST00000554879 SPTLC1O15269 473 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 NDUFV1P49821 464 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 VCPP55072 806 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 NOMO2Q5JPE7 1267 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 DBF4BQ8NFT6 615 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 ZNF296Q8WUU4 475 aaPredicted RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CAVIN3Q969G5 261 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 UBN1Q9NPG3 1134 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SLC12A6Q9UHW9 1150 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 PTCH2Q9Y6C5 1203 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CHRNA1P02708 482 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 FESP07332 822 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CYP2F1P24903 491 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 APLP1P51693 650 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 KDELC2Q7Z4H8 507 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SCLYQ96I15 445 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 KCNK16Q96T55 309 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SNRNP25Q9BV90 132 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CNTN3Q9P232 1028 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CHN1P15882 459 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SAT1P21673 171 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 AFF1P51825 1210 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 ATXN1P54253 815 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 TUSC3Q13454 348 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 TMC3Q7Z5M5 1100 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 CDKL3Q8IVW4 592 aaPredicted RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 LRRC34Q8IZ02 419 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 WDTC1Q8N5D0 677 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 MYLPFQ96A32 169 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SMARCD1Q96GM5 515 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 TSC22D4Q9Y3Q8 395 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 DNAJC8O75937 253 aaPredicted RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 TRUB2O95900 331 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 MAGEA4P43358 317 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 VEGFBP49765 207 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 ERMARDQ5T6L9 678 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 SMG8Q8ND04 991 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 GPR152Q8TDT2 470 aa17.12■□□□□ 0.33
PCNX1-209ENST00000554879 XPO6Q96QU8 1125 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 PABPC3Q9H361 631 aaKnown RBP17.12■□□□□ 0.33
PCNX1-209ENST00000554879 PAPSS1O43252 624 aaPredicted RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 HNRNPRO43390 633 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 PBX3P40426 434 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 SESN2P58004 480 aaPredicted RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 COPS2P61201 443 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 MPP3Q13368 585 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 SERINC5Q86VE9 423 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 GBP7Q8N8V2 638 aaPredicted RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 TBCBQ99426 244 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 NDNQ99608 321 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 CDC42EP4Q9H3Q1 356 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 CYTH4Q9UIA0 394 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 DNAJB2P25686 324 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 MAPRE1Q15691 268 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 TIGD5Q53EQ6 642 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 FAM35AQ86V20 835 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 TMEM86AQ8N2M4 240 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 TOP6BLQ8N6T0 577 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 SLAIN1Q8ND83 568 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 EPS8L3Q8TE67 593 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 PIWIL1Q96J94 861 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 PAAF1Q9BRP4 392 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 COLEC11Q9BWP8 271 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 hCG_1818297A0A087WSY0 165 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 CCDC78A2IDD5 438 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 HIC1Q14526 733 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 MAB21L3Q8N8X9 362 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 TMEM174Q8WUU8 243 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 DDX50Q9BQ39 737 aaKnown RBP17.11■□□□□ 0.33
PCNX1-209ENST00000554879 SIKE1Q9BRV8 207 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 CENPKQ9BS16 269 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 RHOBTB2Q9BYZ6 727 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 PRDM16Q9HAZ2 1276 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 MYO9BQ13459 2157 aa17.11■□□□□ 0.33
PCNX1-209ENST00000554879 FAM189A1O60320 539 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 ZFXP17010 805 aaPredicted RBP17.1■□□□□ 0.33
PCNX1-209ENST00000554879 ZNF132P52740 706 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 TBC1D25Q3MII6 688 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 SLC24A5Q71RS6 500 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 PCGF5Q86SE9 256 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 NMD3Q96D46 503 aaKnown RBP17.1■□□□□ 0.33
PCNX1-209ENST00000554879 TMEM39AQ9NV64 488 aa17.1■□□□□ 0.33
PCNX1-209ENST00000554879 TMA7Q9Y2S6 64 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms