RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 MCCD1P59942 119 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-215ENST00000554656 UAP1L1Q3KQV9 507 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 C10orf120Q5SQS8 335 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 DAB2IPQ5VWQ8 1189 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 LYSMD4Q5XG99 296 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 KLHDC10Q6PID8 442 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 CCDC186Q7Z3E2 898 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 TRMT11Q7Z4G4 463 aaKnown RBP11.11□□□□□ -0.63
SHMT2-215ENST00000554656 SLC41A1Q8IVJ1 513 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 PGBD3Q8N328 593 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 DEFB124Q8NES8 71 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 IPO4Q8TEX9 1081 aaKnown RBP11.11□□□□□ -0.63
SHMT2-215ENST00000554656 EEF2KMTQ96G04 330 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 TSG101Q99816 390 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 GABRG3Q99928 467 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 TMEM121BQ9BXQ6 578 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-215ENST00000554656 CACNA2D2Q9NY47 1150 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 PLK2Q9NYY3 685 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 LIMA1Q9UHB6 759 aaKnown RBP11.11□□□□□ -0.63
SHMT2-215ENST00000554656 USP3Q9Y6I4 520 aa11.11□□□□□ -0.63
SHMT2-215ENST00000554656 WASH3PC4AMC7 463 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 SERPINC1P01008 464 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 PRKCSHP14314 528 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 MAPK8P45983 427 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 STX17P56962 302 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 UBASH3AP57075 661 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 RPL6Q02878 288 aaKnown RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 ENPEPQ07075 957 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 FOXC1Q12948 553 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 NUMA1Q14980 2115 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 FILIP1LQ4L180 1135 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 ZNF394Q53GI3 561 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 SPDYCQ5MJ68 293 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 SLC23A3Q6PIS1 610 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 INTS8Q75QN2 995 aaKnown RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 BHLHA9Q7RTU4 235 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 SLC4A11Q8NBS3 891 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 DUSP16Q9BY84 665 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 IMPG2Q9BZV3 1241 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 XPO4Q9C0E2 1151 aaKnown RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 CAPN10Q9HC96 672 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 TMEM8AQ9HCN3 771 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 SAMSN1Q9NSI8 373 aaKnown RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 IFNKQ9P0W0 207 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 WDR35Q9P2L0 1181 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 IMPACTQ9P2X3 320 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 DNMT3LQ9UJW3 386 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 NAGPAQ9UK23 515 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 LSM7Q9UK45 103 aaKnown RBP11.1□□□□□ -0.63
SHMT2-215ENST00000554656 FBXO10Q9UK96 956 aa11.1□□□□□ -0.63
SHMT2-215ENST00000554656 WDFY3Q8IZQ1 3526 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 C1QTNF9BB2RNN3 333 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 TULP2O00295 520 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PENKP01210 267 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CFIP05156 583 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PTMAP06454 111 aaKnown RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 C1QTNF9P0C862 333 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 ATP1A3P13637 1013 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CEACAM1P13688 526 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PSMC2P35998 433 aaKnown RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PLA2G4AP47712 749 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 DGKGP49619 791 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 RAD23BP54727 409 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 EDRF1Q3B7T1 1238 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PREPLQ4J6C6 727 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 FYB2Q5VWT5 728 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PIP4P1Q86T03 277 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 ZC3H3Q8IXZ2 948 aaKnown RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CHPFQ8IZ52 775 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 ZNF276Q8N554 614 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 OR2I1PQ8NGU4 316 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 TATDN2Q93075 761 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 MRGPRX1Q96LB2 322 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CEP63Q96MT8 703 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 XPO6Q96QU8 1125 aaKnown RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 NUSAP1Q9BXS6 441 aaKnown RBP11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CISHQ9NSE2 258 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CLEC4EQ9ULY5 219 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 CYP8B1Q9UNU6 501 aa11.09□□□□□ -0.63
SHMT2-215ENST00000554656 PROS1P07225 676 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 HMBSP08397 361 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 KRT13P13646 458 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 CORO1AP31146 461 aaKnown RBP11.08□□□□□ -0.64
SHMT2-215ENST00000554656 GTF2H1P32780 548 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 HOXD12P35452 270 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 MXI1P50539 228 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 MFAP3P55082 362 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 GSDMDP57764 484 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 FAM193AP78312 1265 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 FKBP3Q00688 224 aaKnown RBP11.08□□□□□ -0.64
SHMT2-215ENST00000554656 ZNF33AQ06730 810 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 GOLGA8FQ08AF8 430 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 GOLGA8DPQ0D2H9 430 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 EFEMP1Q12805 493 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 LMAN2Q12907 356 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 SEMA3BQ13214 749 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 ADAM9Q13443 819 aa11.08□□□□□ -0.64
SHMT2-215ENST00000554656 BYSLQ13895 437 aaKnown RBP11.08□□□□□ -0.64
SHMT2-215ENST00000554656 GEN1Q17RS7 908 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms