RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ZNF394Q53GI3 561 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM240Q5SV17 173 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ARHGAP17Q68EM7 881 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 OVOS1Q6IE37 1185 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 LETMD1Q6P1Q0 360 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 LCLAT1Q6UWP7 414 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 SCARA5Q6ZMJ2 495 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 C4orf50Q6ZRC1 276 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 OTOP2Q7RTS6 562 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 LIMS2Q7Z4I7 341 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 SLC47A2Q86VL8 602 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ERICH1Q86X53 443 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF280BQ86YH2 543 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 FIBCD1Q8N539 461 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 SLC4A11Q8NBS3 891 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 HERVK_113Q902F9 699 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 GAL3ST3Q96A11 431 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF689Q96CS4 500 aaPredicted RBP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 CYFIP2Q96F07 1278 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 FAM84AQ96KN4 292 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF558Q96NG5 402 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 YME1L1Q96TA2 773 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 RAD9AQ99638 391 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ISCUQ9H1K1 167 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 SMYD3Q9H7B4 428 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 CARS2Q9HA77 564 aaKnown RBP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ATP13A1Q9HD20 1204 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 MRPL47Q9HD33 250 aaKnown RBP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 RNF19AQ9NV58 838 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 TRMT1Q9NXH9 659 aaKnown RBP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 DDX43Q9NXZ2 648 aaKnown RBP5.29□□□□□ -1.56
VTI1B-202ENST00000553619 WDR35Q9P2L0 1181 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 ADAM28Q9UKQ2 775 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 STRIP2Q9ULQ0 834 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 PYCARDQ9ULZ3 195 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 GUCA1BQ9UMX6 200 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 STXBP5LQ9Y2K9 1186 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 PCDHB12Q9Y5F1 795 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 SLC4A7Q9Y6M7 1214 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 MYH10P35580 1976 aa5.29□□□□□ -1.56
VTI1B-202ENST00000553619 FNDC1Q4ZHG4 1894 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SF3B1O75533 1304 aaKnown RBP eCLIP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 OR6C75A6NL08 312 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 PPEF2O14830 753 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 OAZ2O95190 189 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 MMEP08473 750 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM253P0C7T8 217 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 PNMA6AP0CW24 399 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CHRNB2P17787 502 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ITGB8P26012 769 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CASQ1P31415 396 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NOP2P46087 812 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 BRCC3P46736 316 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF132P52740 706 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 GALCP54803 685 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 BCAR1P56945 870 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 FMO1Q01740 532 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CREMQ03060 361 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TAP1Q03518 808 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TUBB2AQ13885 445 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SLBPQ14493 270 aaKnown RBP eCLIP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF268Q14587 947 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 MTF1Q14872 753 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NKG7Q16617 165 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NFE2Q16621 373 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CLEC16AQ2KHT3 1053 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TSNAXIP1Q2TAA8 658 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 USP41Q3LFD5 358 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 FBLN7Q53RD9 439 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TAF3Q5VWG9 929 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 WSCD1Q658N2 575 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 E4F1Q66K89 784 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ZNF280DQ6N043 979 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 KIAA1841Q6NSI8 718 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 FUT10Q6P4F1 479 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 KCNT2Q6UVM3 1135 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TOGARAM2Q6ZUX3 1019 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ANKS3Q6ZW76 656 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ACOT1Q86TX2 421 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NOP9Q86U38 636 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CEP57Q86XR8 500 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 PHF13Q86YI8 300 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ZDHHC17Q8IUH5 632 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CILP2Q8IUL8 1156 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 REXO1L1PQ8IX06 675 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 GPR65Q8IYL9 337 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SYCE1Q8N0S2 351 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 PDCL2Q8N4E4 241 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ANKRD52Q8NB46 1076 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TRIM58Q8NG06 486 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 IPO4Q8TEX9 1081 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 DDX1Q92499 740 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SECISBP2LQ93073 1101 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 C18orf8Q96DM3 657 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM169Q96HH4 297 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 HSFY1Q96LI6 401 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 HSPA12BQ96MM6 686 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SAMD11Q96NU1 681 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms