RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ST7Q9NRC1 585 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 DNAJC17Q9NVM6 304 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 PLK2Q9NYY3 685 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 TJP2Q9UDY2 1190 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 EBF1Q9UH73 591 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 STOML2Q9UJZ1 356 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 PCDHGC3Q9UN70 934 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 STARD13Q9Y3M8 1113 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 FHOD1Q9Y613 1164 aa10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 HELZP42694 1942 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-206ENST00000553437 CHD8Q9HCK8 2581 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 OTOGLQ3ZCN5 2332 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 EP300Q09472 2414 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 E5RJQ4 531 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 AXIN1O15169 862 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 KLF8O95600 359 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 UCHL3P15374 230 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 TGM1P22735 817 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 HARS2P49590 506 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 PTK2Q05397 1052 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 PDCLQ13371 301 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 SIM2Q14190 667 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 DRAP1Q14919 205 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 NCAPHQ15003 741 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 LPAL2Q16609 132 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 STX1AQ16623 288 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 HSF5Q4G112 596 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 PREPLQ4J6C6 727 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 C10orf76Q5T2E6 689 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 SYPL2Q5VXT5 272 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 BEND5Q7L4P6 421 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 SLC47A2Q86VL8 602 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 RASSF3Q86WH2 238 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 DQX1Q8TE96 717 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 GAB3Q8WWW8 586 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 BHMTQ93088 406 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 CPXM1Q96SM3 734 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 LSM14BQ9BX40 385 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 VPS16Q9H269 839 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 HSD3B7Q9H2F3 369 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 ZDHHC4Q9NPG8 344 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 CLEC4EQ9ULY5 219 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 NAALADL1Q9UQQ1 740 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 SLC27A6Q9Y2P4 619 aa10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 TPRP12270 2363 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-206ENST00000553437 LRRC10BA6NIK2 292 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PES1O00541 588 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 SART1O43290 800 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 LATS1O95835 1130 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 NCAM1P13591 858 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 ZNF18P17022 549 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 DGKGP49619 791 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 KLK7P49862 253 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 RING1Q06587 406 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 EIF4EBP2Q13542 120 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 TAF5Q15542 800 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 EOGTQ5NDL2 527 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 LAIR1Q6GTX8 287 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PRR23BQ6ZRT6 265 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 APTXQ7Z2E3 356 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PASD1Q8IV76 773 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 TSTD1Q8NFU3 115 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 DDX1Q92499 740 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 SLC39A13Q96H72 371 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PIWIL1Q96J94 861 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PPP1R13BQ96KQ4 1090 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 ACOX2Q99424 681 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 GANQ9H2C0 597 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 PLCB1Q9NQ66 1216 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 NCDNQ9UBB6 729 aa10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 LIMA1Q9UHB6 759 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-206ENST00000553437 FANCMQ8IYD8 2048 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 GOLGA6L7A0A1B0GV03 622 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 A0A1W2PQF6 199 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 EPHB6O15197 1021 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 RPP40O75818 363 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 IGLV3-25P01717 112 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 RETP07949 1114 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 CYP11B1P15538 503 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 HOXD9P28356 352 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 DGKEP52429 567 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 COPB1P53618 953 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 TBX4P57082 545 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 BPIFB4P59827 614 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 YWHAZP63104 245 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 MYL5Q02045 173 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 TYRO3Q06418 890 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 NNTQ13423 1086 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 RAPGEF1Q13905 1077 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 GEN1Q17RS7 908 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 MPPE1Q53F39 396 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ADGRF1Q5T601 910 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 EGFLAMQ63HQ2 1017 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 RNF43Q68DV7 783 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 NADSYN1Q6IA69 706 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 ANO7Q6IWH7 933 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 NUDT18Q6ZVK8 323 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 TAC4Q86UU9 113 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 KBTBD6Q86V97 674 aa10.7□□□□□ -0.7
CCDC88C-206ENST00000553437 SPNS2Q8IVW8 549 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms