RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 NDUFA10O95299 355 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 DDX6P26196 483 aaKnown RBP eCLIP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 THBS4P35443 961 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 PSMC2P35998 433 aaKnown RBP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 NXPH1P58417 271 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 PRKG2Q13237 762 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 SPATA1Q5VX52 437 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 GRHL2Q6ISB3 625 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 BRINP3Q76B58 766 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 KRT27Q7Z3Y8 459 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 MAVSQ7Z434 540 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 TMPRSS6Q8IU80 811 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 FAM71DQ8N9W8 422 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 B3GALNT2Q8NCR0 500 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 SLC2A12Q8TD20 617 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 SNRNP27Q8WVK2 155 aaKnown RBP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 CTHRC1Q96CG8 243 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 WDYHV1Q96HA8 205 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 PRDM13Q9H4Q3 707 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 AURKAIP1Q9NWT8 199 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 SLC45A1Q9Y2W3 748 aa5.64□□□□□ -1.51
SCFD1-209ENST00000553280 LAS1LQ9Y4W2 734 aaKnown RBP5.64□□□□□ -1.51
SCFD1-209ENST00000553280 A0A1W2PPH5 198 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 ANKRD18BA2A2Z9 1011 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 MBD3L5A6NJ08 208 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 M0QYT0 321 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 NKX2-8O15522 239 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 KLK10O43240 276 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 HNRNPRO43390 633 aaKnown RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 HEXIM1O94992 359 aaKnown RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RTN3O95197 1032 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 SLPIP03973 132 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 CYP3A4P08684 503 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 CPA1P15085 419 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 MMP8P22894 467 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 ACVRL1P37023 503 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 LIPAP38571 399 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RPL15P61313 204 aaKnown RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 DCAF7P61962 342 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 BFSP2Q13515 415 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 SLC45A4Q5BKX6 768 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 CBWD5Q5RIA9 395 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RNF207Q6ZRF8 634 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 LRRC8DQ7L1W4 858 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 PTGR2Q8N8N7 351 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 CPEB3Q8NE35 698 aaKnown RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 TDRD7Q8NHU6 1098 aaKnown RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 ADAMTS15Q8TE58 950 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 LPIN2Q92539 896 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 NPIPB3Q92617 1050 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 STAMQ92783 540 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RNF125Q96EQ8 232 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 VPS50Q96JG6 964 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 FAR2Q96K12 515 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 SORCS2Q96PQ0 1159 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 PIGSQ96S52 555 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 ADAM2Q99965 735 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 TREX2Q9BQ50 279 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 CHCHD6Q9BRQ6 235 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 DPCDQ9BVM2 203 aaPredicted RBP5.63□□□□□ -1.51
SCFD1-209ENST00000553280 ACAD9Q9H845 621 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RMI1Q9H9A7 625 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 RABGAP1Q9Y3P9 1069 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 PCDHA10Q9Y5I2 948 aa5.63□□□□□ -1.51
SCFD1-209ENST00000553280 A6NCN8 305 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 NPIPB8E9PQR5 432 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PLSCR1O15162 318 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PROM1O43490 865 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 SPRY2O43597 315 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 USO1O60763 962 aaKnown RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PMPCBO75439 489 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 ONECUT2O95948 504 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 CHN1P15882 459 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 ACRV1P26436 265 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 GKP32189 559 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PGM1P36871 562 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 CCT4P50991 539 aaKnown RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 FAM3BP58499 235 aaPredicted RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 DGCR2P98153 550 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 FOXE3Q13461 319 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 DNASE1L3Q13609 305 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 TREML2Q5T2D2 321 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 ZNF618Q5T7W0 954 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 TEDDM1Q5T9Z0 273 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 VWA1Q6PCB0 445 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 KRBA2Q6ZNG9 492 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 USP51Q70EK9 711 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 LNX2Q8N448 690 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 ANKRD44Q8N8A2 993 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 FKBP10Q96AY3 582 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 R3HDM4Q96D70 268 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PTCD3Q96EY7 689 aaKnown RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 MYEOVQ96EZ4 313 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 RBM17Q96I25 401 aaKnown RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 PPP1R10Q96QC0 940 aaKnown RBP5.62□□□□□ -1.51
SCFD1-209ENST00000553280 CLIC5Q9NZA1 410 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 HSF4Q9ULV5 492 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 GABRQQ9UN88 632 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms