RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ARHGAP8P85298 464 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SLC6A3Q01959 620 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TMEM62Q0P6H9 643 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 OLIG2Q13516 323 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PDK2Q15119 407 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 BOLA3Q53S33 107 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 NAIF1Q69YI7 327 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 LRRC74BQ6ZQY2 392 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 C7orf31Q8N865 590 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 STKLD1Q8NE28 680 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 NDRG1Q92597 394 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ZMAT2Q96NC0 199 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 VRTNQ9H8Y1 702 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 GPRC5DQ9NZD1 345 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SIRPGQ9P1W8 387 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 STOML1Q9UBI4 398 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF180Q9UJW8 692 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 GJD2Q9UKL4 321 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 GINS2Q9Y248 185 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 HES2Q9Y543 173 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PDCD11Q14690 1871 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC189A1A4V9 331 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 FAM159BA6NKW6 160 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ENO4A6NNW6 628 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SORBS2O94875 1100 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 GSRP00390 522 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 BPGMP07738 259 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 P4HA1P13674 534 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 LCP1P13796 627 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC130P13994 396 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 VAV1P15498 845 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ACADSP16219 412 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ADORA2BP29275 332 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ATICP31939 592 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 MAGEA3P43357 314 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PSEN1P49768 467 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SLC34A1Q06495 639 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SOWAHAQ2M3V2 549 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TSNAXIP1Q2TAA8 658 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PKDCCQ504Y2 493 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 BSPRYQ5W0U4 402 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 CASC4Q6P4E1 433 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TMEM154Q6P9G4 183 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 CES3Q6UWW8 571 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 GSDMBQ8TAX9 411 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SH3TC2Q8TF17 1288 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 DEPDC1BQ8WUY9 529 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SLC35F5Q8WV83 523 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 C18orf25Q96B23 403 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 FAM136AQ96C01 138 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 C7orf26Q96N11 449 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 RILPQ96NA2 401 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PANX3Q96QZ0 392 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 KCTD15Q96SI1 283 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 LGMNQ99538 433 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 EBNA1BP2Q99848 306 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 THTPAQ9BU02 230 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 APOL6Q9BWW8 343 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 SHCBP1LQ9BZQ2 653 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 ASB7Q9H672 318 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 KRT82Q9NSB4 513 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 MTMR10Q9NXD2 777 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 KCNK4Q9NYG8 393 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 RBPJLQ9UBG7 517 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 HESX1Q9UBX0 185 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TUBGCP4Q9UGJ1 667 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 EMCNQ9ULC0 261 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PLA2G4CQ9UP65 541 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 HBS1LQ9Y450 684 aaKnown RBP7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PPME1Q9Y570 386 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 PSAT1Q9Y617 370 aa7.75□□□□□ -1.17
LIMA1-213ENST00000552720 TSPAN1O60635 241 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 KRT38O76015 456 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 USP1O94782 785 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 IL1BP01584 269 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 LMNAP02545 664 aaKnown RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ALDOAP04075 364 aaKnown RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PDGFRBP09619 1106 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 GOT1P17174 413 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ARRB2P32121 409 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 MAGEA6P43360 314 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 GTF2A2P52657 109 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SESN2P58004 480 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PITX1P78337 314 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 RBP5P82980 135 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PPM1JQ5JR12 505 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF618Q5T7W0 954 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 POTEAQ6S8J7 498 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 TP53INP2Q8IXH6 220 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 POU5F2Q8N7G0 328 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SMC1BQ8NDV3 1235 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 PHC3Q8NDX5 983 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 NLRP7Q8WX94 980 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 CCDC106Q9BWC9 280 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF358Q9NW07 568 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 ERAP1Q9NZ08 941 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 DTLQ9NZJ0 730 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 SLC7A8Q9UHI5 535 aa7.74□□□□□ -1.17
LIMA1-213ENST00000552720 RPL26L1Q9UNX3 145 aaKnown RBP7.74□□□□□ -1.17
LIMA1-213ENST00000552720 AP4E1Q9UPM8 1137 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms