RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 DDI1Q8WTU0 396 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 KCTD13Q8WZ19 329 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 GOLGA1Q92805 767 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 CNGB3Q9NQW8 809 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 ABCC13Q9NSE7 274 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 CACNA2D2Q9NY47 1150 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 PILRBQ9UKJ0 227 aa13.73□□□□□ -0.21
RTN3-213ENST00000543552 CEP295Q9C0D2 2601 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 PATE3B3GLJ2 98 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 O00370 1275 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 TIMM44O43615 452 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 SYNCRIPO60506 623 aaKnown RBP13.72□□□□□ -0.21
RTN3-213ENST00000543552 NDUFS2O75306 463 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 LATS1O95835 1130 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 GNA14O95837 355 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 CFIP05156 583 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 CSRP1P21291 193 aaKnown RBP13.72□□□□□ -0.21
RTN3-213ENST00000543552 PMLP29590 882 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 ATXN3P54252 364 aaPredicted RBP13.72□□□□□ -0.21
RTN3-213ENST00000543552 IRX4P78413 519 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 SHC2P98077 582 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 ARID5AQ03989 594 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 LRMPQ12912 555 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 DUOXA1Q1HG43 343 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 MPPE1Q53F39 396 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 SYCP2LQ5T4T6 812 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 N4BP2L1Q5TBK1 243 aaPredicted RBP13.72□□□□□ -0.21
RTN3-213ENST00000543552 SLC23A3Q6PIS1 610 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 TMEM270Q6UE05 265 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 LCLAT1Q6UWP7 414 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 KIAA1324Q6UXG2 1013 aaKnown RBP13.72□□□□□ -0.21
RTN3-213ENST00000543552 FMNL3Q8IVF7 1028 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 FAM217AQ8IXS0 508 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 SCML4Q8N228 414 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 PPM1KQ8N3J5 372 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 FOXJ1Q92949 421 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 ACOX2Q99424 681 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 HCN2Q9UL51 889 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 CYP8B1Q9UNU6 501 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 PCDHB4Q9Y5E5 795 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 STON1Q9Y6Q2 735 aa13.72□□□□□ -0.21
RTN3-213ENST00000543552 IGHV1OR15-9A0A0B4J2B8 117 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 CEACAM1P13688 526 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 ITPKAP23677 461 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 GFPT1Q06210 699 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 ZNF33AQ06730 810 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 TRIP4Q15650 581 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 BSPRYQ5W0U4 402 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 KLHL10Q6JEL2 608 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 KIAA1211LQ6NV74 962 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 UBR7Q8N806 425 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 FRMD1Q8N878 549 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 ZNF557Q8N988 423 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 IRGQQ8WZA9 623 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 ERCC4Q92889 916 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 MRGPRX1Q96LB2 322 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 IRX2Q9BZI1 471 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 SLC32A1Q9H598 525 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 CD248Q9HCU0 757 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 THAP10Q9P2Z0 257 aaPredicted RBP13.71□□□□□ -0.21
RTN3-213ENST00000543552 SUSD2Q9UGT4 822 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 MAN1B1Q9UKM7 699 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 SLC6A14Q9UN76 642 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 RAD54BQ9Y620 910 aa13.71□□□□□ -0.21
RTN3-213ENST00000543552 TNRC6BQ9UPQ9 1833 aaKnown RBP13.71□□□□□ -0.22
RTN3-213ENST00000543552 CACNA1BQ00975 2339 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 ATXN2Q99700 1313 aaKnown RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 M0QYV0 167 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 TULP2O00295 520 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 CDX4O14627 284 aaPredicted RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 SART1O43290 800 aaKnown RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 FBXO21O94952 628 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 FGFR1OPO95684 399 aaKnown RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 SERPINF2P08697 491 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 GNSP15586 552 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 ENGP17813 658 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 MAPK8P45983 427 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 GCNT1Q02742 428 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 ZNF252P-AS1Q0IIN9 211 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 CNGA2Q16280 664 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 GEN1Q17RS7 908 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 UAP1L1Q3KQV9 507 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 WDR45BQ5MNZ6 344 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 ADGRF1Q5T601 910 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 SH3PXD2AQ5TCZ1 1133 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 NUGGCQ68CJ6 796 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 TTI2Q6NXR4 508 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 BHLHA9Q7RTU4 235 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 METTL3Q86U44 580 aaKnown RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 HDDC3Q8N4P3 179 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 UBA3Q8TBC4 463 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 WFIKKN2Q8TEU8 576 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 NELFBQ8WX92 580 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 PIWIL1Q96J94 861 aaKnown RBP13.7□□□□□ -0.22
RTN3-213ENST00000543552 HSPA12BQ96MM6 686 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 TRIM62Q9BVG3 475 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 CIPCQ9C0C6 399 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 PRDM16Q9HAZ2 1276 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 ELOVL2Q9NXB9 296 aa13.7□□□□□ -0.22
RTN3-213ENST00000543552 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms