RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 OTUD1Q5VV17 481 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 SND1Q7KZF4 910 aaKnown RBP eCLIP17.82■□□□□ 0.44
LIG1-204ENST00000542460 STRADAQ7RTN6 431 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 BNIPLQ7Z465 357 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 KIAA1328Q86T90 577 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 MFSD6LQ8IWD5 586 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 UNC45BQ8IWX7 931 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 TTC16Q8NEE8 873 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 ST13P5Q8NFI4 369 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 CENPIQ92674 756 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 SLC39A13Q96H72 371 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 ZNF830Q96NB3 372 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 LRRC3BQ96PB8 259 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 TRIM7Q9C029 511 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 KCNF1Q9H3M0 494 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 KCNK12Q9HB15 430 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.82■□□□□ 0.44
LIG1-204ENST00000542460 COX16Q9P0S2 106 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 LCMT1Q9UIC8 334 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 ANAPC7Q9UJX3 599 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 LSM7Q9UK45 103 aaKnown RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 A0A0A6YYK5 440 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 C19orf67A6NJJ6 358 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 MYO1FO00160 1098 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 PJA2O43164 708 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 MTA2O94776 668 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 IGLV3-27P01718 113 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 SLC2A3P11169 496 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 PSMC3P17980 439 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 PSMA2P25787 234 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 RDXP35241 583 aaKnown RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 HARS2P49590 506 aaKnown RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 OGDHQ02218 1023 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 CDO1Q16878 200 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 C15orf59Q2T9L4 293 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 NUGGCQ68CJ6 796 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 VITQ6UXI7 678 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 HTR3DQ70Z44 454 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 DEPDC1BQ8WUY9 529 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 NECAB3Q96P71 396 aaPredicted RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 ADAM33Q9BZ11 813 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 PLA2G2FQ9BZM2 168 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 DCLK3Q9C098 648 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 OSGEPQ9NPF4 335 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 THG1LQ9NWX6 298 aaKnown RBP17.82■□□□□ 0.44
LIG1-204ENST00000542460 CALCOCO1Q9P1Z2 691 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 IP6K2Q9UHH9 426 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 TFR2Q9UP52 801 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 PAXBP1Q9Y5B6 917 aa17.82■□□□□ 0.44
LIG1-204ENST00000542460 RCCD1A6NED2 376 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 CCP110O43303 1012 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 GREM1O60565 184 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 CCDC175P0C221 793 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 CCR1P32246 355 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 CXCR3P49682 368 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 FCHO2Q0JRZ9 810 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 KIF5AQ12840 1032 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 PIGHQ14442 188 aaPredicted RBP17.81■□□□□ 0.44
LIG1-204ENST00000542460 ACAP1Q15027 740 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 SH3PXD2AQ5TCZ1 1133 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 CC2D1AQ6P1N0 951 aaPredicted RBP17.81■□□□□ 0.44
LIG1-204ENST00000542460 RIN3Q8TB24 985 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 FAM172AQ8WUF8 416 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 RSAD2Q8WXG1 361 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 RNF34Q969K3 372 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 FCRL2Q96LA5 508 aaPredicted RBP17.81■□□□□ 0.44
LIG1-204ENST00000542460 RPP25Q9BUL9 199 aaKnown RBP17.81■□□□□ 0.44
LIG1-204ENST00000542460 WDCPQ9H6R7 721 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 PIGVQ9NUD9 493 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 ZNF510Q9Y2H8 683 aa17.81■□□□□ 0.44
LIG1-204ENST00000542460 DOCK8Q8NF50 2099 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 BTNL10A8MVZ5 291 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 RNF8O76064 485 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 HADHBP55084 474 aaKnown RBP17.8■□□□□ 0.44
LIG1-204ENST00000542460 ZNF252P-AS1Q0IIN9 211 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 PPP2R5DQ14738 602 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 ZC3H12AQ5D1E8 599 aaKnown RBP17.8■□□□□ 0.44
LIG1-204ENST00000542460 YAF2Q8IY57 180 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 WBP2Q969T9 261 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 NCAPGQ9BPX3 1015 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 TRMT61BQ9BVS5 477 aaKnown RBP17.8■□□□□ 0.44
LIG1-204ENST00000542460 LACRTQ9GZZ8 138 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 TBC1D14Q9P2M4 693 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 SLC12A6Q9UHW9 1150 aa17.8■□□□□ 0.44
LIG1-204ENST00000542460 SLC9A3R1O14745 358 aaPredicted RBP17.79■□□□□ 0.44
LIG1-204ENST00000542460 APOEP02649 317 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 KLKB1P03952 638 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 CORO1AP31146 461 aaKnown RBP17.79■□□□□ 0.44
LIG1-204ENST00000542460 ARHGAP25P42331 645 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 NOP2P46087 812 aaKnown RBP17.79■□□□□ 0.44
LIG1-204ENST00000542460 HDAC4P56524 1084 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 MTA1Q13330 715 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 ARHGAP29Q52LW3 1261 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 BRMS1LQ5PSV4 323 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 Q6ZNB5 142 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 DENND1CQ8IV53 801 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 SLC44A3Q8N4M1 653 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 NIPA2Q8N8Q9 360 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 AZIN2Q96A70 460 aa17.79■□□□□ 0.44
LIG1-204ENST00000542460 BTBD6Q96KE9 485 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms