RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 DARS2Q6PI48 645 aaKnown RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 RNF168Q8IYW5 571 aaPredicted RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 TNS4Q8IZW8 715 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 CCDC89Q8N998 374 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 RNF139Q8WU17 664 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 P3H4Q92791 437 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 CASP10Q92851 521 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF689Q96CS4 500 aaPredicted RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 PGAP3Q96FM1 320 aaPredicted RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 ABHD8Q96I13 439 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 NCAPGQ9BPX3 1015 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 ARHGEF4Q9NR80 690 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 FBXW11Q9UKB1 542 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 PCDHB5Q9Y5E4 795 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 MRPL42Q9Y6G3 142 aaKnown RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 OR6C75A6NL08 312 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF487B1APH4 448 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 H7C0C1 242 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CREB3O43889 395 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 BANF1O75531 89 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 TIMP1P01033 207 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 DESP17661 470 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 GBP1P32455 592 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ATP5OP48047 213 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ROR1Q01973 937 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 LMNB2Q03252 620 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 DPYSQ14117 519 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 VSIG1Q86XK7 387 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 SH2D3CQ8N5H7 860 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ANKLE1Q8NAG6 615 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 TOP1MTQ969P6 601 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 FUBP3Q96I24 572 aaKnown RBP eCLIP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 C8orf48Q96LL4 319 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 TTPALQ9BTX7 342 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 FRMD8P1Q9BZ68 369 aaPredicted RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ACBD3Q9H3P7 528 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CDC42EP4Q9H3Q1 356 aaKnown RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 MED4Q9NPJ6 270 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 DTLQ9NZJ0 730 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 GMIPQ9P107 970 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 VPS18Q9P253 973 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 MTRF1LQ9UGC7 380 aaKnown RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CDY1Q9Y6F8 540 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 ALPK3Q96L96 1907 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 KIAA0355O15063 1070 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 TMEM63AO94886 807 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CPB1P15086 417 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 VAV1P15498 845 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CXCR3P49682 368 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 WDR5P61964 334 aaKnown RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 NFE2Q16621 373 aaPredicted RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CEP85LQ5SZL2 805 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 SYCP2LQ5T4T6 812 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 C16orf59Q7L2K0 433 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 RSAD2Q8WXG1 361 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 CPT1BQ92523 772 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 NTAN1Q96AB6 310 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 IGSF21Q96ID5 467 aa12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
AP003559.1-201ENST00000540906 WDR27A2RRH5 827 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 GOLGA8MH3BSY2 632 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 C2CD2LO14523 706 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 KCNN4O15554 427 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 IRAK2O43187 625 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 RIPK2O43353 540 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 RFC2P35250 354 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 MAGEA11P43364 429 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 SCAPQ12770 1279 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 DUSP4Q13115 394 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 GPR17Q13304 367 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 MTM1Q13496 603 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 SLC29A2Q14542 456 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 FASTKD3Q14CZ7 662 aaKnown RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 EFHC2Q5JST6 749 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 KCTD16Q68DU8 428 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 VSTM1Q6UX27 236 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 LRIG3Q6UXM1 1119 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 NUP93Q8N1F7 819 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 PRCCQ92733 491 aaPredicted RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 SEPT5Q99719 369 aaPredicted RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 WDR83Q9BRX9 315 aaKnown RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 TKTL2Q9H0I9 626 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 PABPC3Q9H361 631 aaKnown RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 IL37Q9NZH6 218 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 XPO7Q9UIA9 1087 aaKnown RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 TPX2Q9ULW0 747 aaKnown RBP12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 NEU3Q9UQ49 428 aa12.71□□□□□ -0.38
AP003559.1-201ENST00000540906 DCLK1O15075 740 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 HAPLN1P10915 354 aaPredicted RBP12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 RARGP13631 454 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 ATF6P18850 670 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 HP1BP3Q5SSJ5 553 aaPredicted RBP12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 FAXCQ5TGI0 409 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 BTBD8Q5XKL5 378 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 KCNT2Q6UVM3 1135 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 RFX8Q6ZV50 586 aa12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 PSTKQ8IV42 348 aaKnown RBP12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 ZCCHC9Q8N567 271 aaKnown RBP12.7□□□□□ -0.38
AP003559.1-201ENST00000540906 NPWQ8N729 165 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms