RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ZFP42Q96MM3 310 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ZMAT2Q96NC0 199 aaKnown RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ZNF317Q96PQ6 595 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CSPG4P5Q96PW8 444 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CCDC134Q9H6E4 229 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 MTO1Q9Y2Z2 717 aaKnown RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 RPS6KL1Q9Y6S9 549 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 A0A0A0MRY4 1105 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 PRPF4O43172 522 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 PSMD3O43242 534 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 YY1P25490 414 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 GBE1Q04446 702 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ANKRD20A2Q5SQ80 823 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ANKRD20A1Q5TYW2 823 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 OLFML1Q6UWY5 402 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 NLRP9Q7RTR0 991 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 TMEM130Q8N3G9 435 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 EDEM1Q92611 657 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 SPATA13Q96N96 652 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 LPIN3Q9BQK8 851 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ADAM7Q9H2U9 754 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 STARD13Q9Y3M8 1113 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 GYG2O15488 501 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 DAB1O75553 588 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 LTFP02788 710 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 HOXD10P28358 340 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 STX3Q13277 289 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 BMPR2Q13873 1038 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 SEPT6Q14141 434 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 PIGWQ7Z7B1 504 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 HNRNPABQ99729 332 aaKnown RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 FSD1LQ9BXM9 530 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CEP41Q9BYV8 373 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ADAMTS10Q9H324 1103 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 RABGEF1Q9UJ41 708 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 HNRNPCL1O60812 293 aaKnown RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 USP17L7P0C7H9 530 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CNTFP26441 200 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 EFTUD2Q15029 972 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 CA9Q16790 459 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 NBPF20Q3BBV1 942 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 OLFML2BQ68BL8 750 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 RGMBQ6NW40 437 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 AGGF1Q8N302 714 aaeCLIP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 USP33Q8TEY7 942 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 ZNF669Q96BR6 464 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-213ENST00000540338 WWP1Q9H0M0 922 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 RNF39Q9H2S5 420 aa11.12□□□□□ -0.63
CLIP1-213ENST00000540338 DNAJC8O75937 253 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 TMEM63AO94886 807 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 NQO1P15559 274 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 SPRP35270 261 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 ADGRD1Q6QNK2 874 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 ATPAF2Q8N5M1 289 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 PCSK9Q8NBP7 692 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 HASPINQ8TF76 798 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 LPPQ93052 612 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 MS4A4AQ96JQ5 239 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 OSBPL7Q9BZF2 842 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 XPNPEP3Q9NQH7 507 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CHST12Q9NRB3 414 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 IPO11Q9UI26 975 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CDH9Q9ULB4 789 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 KCNK1O00180 336 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 ALADP13716 330 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 TAC1P20366 129 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 HOXA11P31270 313 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 GSCP56915 257 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CCL14Q16627 93 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 TAF1BQ53T94 588 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 DCP1BQ8IZD4 617 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 TTC16Q8NEE8 873 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CLEC4CQ8WTT0 213 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CCT6BQ92526 530 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 ATXN7L3BQ96GX2 97 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 PEBP4Q96S96 227 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 DUSP11O75319 330 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 PAMP19021 973 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 RPL9P32969 192 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 SCNN1AP37088 669 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CHI3L2Q15782 390 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 PARP6Q2NL67 630 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 UBAP2Q5T6F2 1119 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 OVOS1Q6IE37 1185 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 RNF180Q86T96 592 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 SRPK1Q96SB4 655 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 FAM96AQ9H5X1 160 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 CATSPERBQ9H7T0 1116 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 LRRC40Q9H9A6 602 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 SMYD2Q9NRG4 433 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 RCOR3Q9P2K3 495 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 FETUBQ9UGM5 382 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 APOBEC2Q9Y235 224 aaKnown RBP11.11□□□□□ -0.63
CLIP1-213ENST00000540338 GIT1Q9Y2X7 761 aa11.11□□□□□ -0.63
CLIP1-213ENST00000540338 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 WDR27A2RRH5 827 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 TADA2AO75478 443 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 KCNE1P15382 129 aa11.1□□□□□ -0.63
CLIP1-213ENST00000540338 WARSP23381 471 aaKnown RBP11.1□□□□□ -0.63
CLIP1-213ENST00000540338 SERPINB4P48594 390 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms