RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RPL10AP62906 217 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 RBP5P82980 135 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 NFE2Q16621 373 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 C1orf220Q5T0J3 134 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 PCSK4Q6UW60 755 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 TMC6Q7Z403 805 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 TAS1R2Q8TE23 839 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 FAM84AQ96KN4 292 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF560Q96MR9 790 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 NT5C1BQ96P26 610 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 ERGIC2Q96RQ1 377 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 RNF38Q9H0F5 515 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 INTS2Q9H0H0 1204 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 FAM124BQ9H5Z6 455 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 IL21RQ9HBE5 538 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 ARHGEF4Q9NR80 690 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 RAB20Q9NX57 234 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 AGAP1Q9UPQ3 857 aa13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLSTN3-208ENST00000538933 FLNCQ14315 2725 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 A0A1W2PQC6 194 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 PMM2O15305 246 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF883P0CG24 379 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 P4HA1P13674 534 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 POLR2BP30876 1174 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 ABCG1P45844 678 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 BNC1Q01954 994 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 LRMPQ12912 555 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 MYO1EQ12965 1108 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 CCDC142Q17RM4 750 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF699Q32M78 642 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 MIB1Q86YT6 1006 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 C1orf127Q8N9H9 656 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 EHBP1Q8NDI1 1231 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 PIP4K2CQ8TBX8 421 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 KCNV2Q8TDN2 545 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 NUP58Q9BVL2 599 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 ZDHHC5Q9C0B5 715 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 CD93Q9NPY3 652 aa13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 FAM207AQ9NSI2 230 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-208ENST00000538933 TMEM131Q92545 1883 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 FAM149AA5PLN7 773 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 KPNA7A9QM74 516 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 J3QKU1 62 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SLC9A1P19634 815 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 MAOBP27338 520 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 CDC25BP30305 580 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 ATICP31939 592 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 PNPLA4P41247 253 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 TAF6P49848 677 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 MCCD1P59942 119 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 TNNC1P63316 161 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SLC7A9P82251 487 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 KDSRQ06136 332 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 TRIM14Q14142 442 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SMAD1Q15797 465 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SGSM1Q2NKQ1 1148 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SV2CQ496J9 727 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 ZNF667Q5HYK9 610 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SPECC1LQ69YQ0 1117 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 VSTM4Q8IW00 320 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 ETFBKMTQ8IXQ9 262 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 PDCD7Q8N8D1 485 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SPC24Q8NBT2 197 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 SETD7Q8WTS6 366 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 DNASE2BQ8WZ79 361 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 IQCDQ96DY2 449 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 ACBD6Q9BR61 282 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 CYP8B1Q9UNU6 501 aa13.15□□□□□ -0.3
CLSTN3-208ENST00000538933 BOD1L1Q8NFC6 3051 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 MYLKQ15746 1914 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 SCAMP3O14828 347 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 ZNF217O75362 1048 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 VNN1O95497 513 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 OLFM2O95897 454 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 PTMAP06454 111 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 PFKLP17858 780 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 NDUFV2P19404 249 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 PON1P27169 355 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 KLK7P49862 253 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 MYL6P60660 151 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 NOP14P78316 857 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 TSPY1Q01534 308 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 CFAP221Q4G0U5 840 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 TRIM65Q6PJ69 517 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 LURAP1LQ8IV03 231 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 PPM1KQ8N3J5 372 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 GALNT15Q8N3T1 639 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 PDCL2Q8N4E4 241 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 ZNF397Q8NF99 534 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 TAF4BQ92750 862 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 HPDLQ96IR7 371 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 FAM81BQ96LP2 452 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 DCBLD2Q96PD2 775 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 SPAG5Q96R06 1193 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 APEX2Q9UBZ4 518 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 SUSD2Q9UGT4 822 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 GTF3C4Q9UKN8 822 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 COQ4Q9Y3A0 265 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms