RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KRT16P08779 473 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 FCER1AP12319 257 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 YBX3P16989 372 aaKnown RBP eCLIP6.92□□□□□ -1.3
USP28-202ENST00000535607 GNAZP19086 355 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 SDHBP21912 280 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 MARK3P27448 753 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 GJA4P35212 333 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 IFNAR2P48551 515 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 MAPKAPK2P49137 400 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 POLGP54098 1239 aaPredicted RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 NAPAP54920 295 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 PLTPP55058 493 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 IRF9Q00978 393 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 PRPF4BQ13523 1007 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 SLC29A2Q14542 456 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 GRM4Q14833 912 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 SBK1Q52WX2 424 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 EMC4Q5J8M3 183 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 FAM26FQ5R3K3 315 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 THEMIS2Q5TEJ8 643 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 DAB2IPQ5VWQ8 1189 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 LRRC55Q6ZSA7 311 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 KCTD1Q719H9 257 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 CBLL1Q75N03 491 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 OVCH1Q7RTY7 1134 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 HEATR3Q7Z4Q2 680 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 NT5DC3Q86UY8 548 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 PTRH1Q86Y79 214 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 KIRREL3Q8IZU9 778 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 GPC2Q8N158 579 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 CERS5Q8N5B7 392 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 KIAA0895Q8NCT3 520 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 B4GALNT2Q8NHY0 566 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 UHMK1Q8TAS1 419 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 ALG3Q92685 438 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 RAD54LQ92698 747 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ARHGEF2Q92974 986 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 OPTNQ96CV9 577 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 SHISA4Q96DD7 197 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 MAML3Q96JK9 1138 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 TGS1Q96RS0 853 aaKnown RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 PLIN2Q99541 437 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 FAM167BQ9BTA0 163 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 IFT22Q9H7X7 185 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ZDHHC18Q9NUE0 388 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 RIC8BQ9NVN3 520 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 SIRT5Q9NXA8 310 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 B4GALT6Q9UBX8 382 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ARMCX3Q9UH62 379 aaPredicted RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 CIDEBQ9UHD4 219 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 PACSIN2Q9UNF0 486 aaPredicted RBP6.92□□□□□ -1.3
USP28-202ENST00000535607 C2CD2Q9Y426 696 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ASB3Q9Y575 518 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 FLT1P17948 1338 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ROBO3Q96MS0 1386 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 CDK5RAP2Q96SN8 1893 aa6.92□□□□□ -1.3
USP28-202ENST00000535607 ADAMTSL1Q8N6G6 1762 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 A0A1W2PRG0 241 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ESYT2A0FGR8 921 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 TMEM120BA0PK00 339 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 EME2A4GXA9 379 aaPredicted RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 DPPA5A6NC42 116 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 A8MXQ7 604 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 TRAFD1O14545 582 aaPredicted RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 KIAA0391O15091 583 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 EPHB6O15197 1021 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 NKRFO15226 690 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP28-202ENST00000535607 RIPK2O43353 540 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 PRKAB2O43741 272 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 CCDC22O60826 627 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 GAS8O95995 478 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 KRT18P05783 430 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 TROVE2P10155 538 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP28-202ENST00000535607 TECP42680 631 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 BTDP43251 543 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 SLC18A1P54219 525 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 HADHBP55084 474 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 JAM2P57087 298 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ZNF280AP59817 542 aaPredicted RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 IRX4P78413 519 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 CXCL9Q07325 125 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 KLRC3Q07444 240 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ADAM9Q13443 819 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 STAT4Q14765 748 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 GPR162Q16538 588 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 EXOC3L4Q17RC7 722 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 LETM2Q2VYF4 491 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 TNFAIP8L3Q5GJ75 292 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 C11orf63Q6NUN7 778 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 RPTNQ6XPR3 784 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 STXBP4Q6ZWJ1 553 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 ZNF605Q86T29 641 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ZC3H18Q86VM9 953 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 RBM12BQ8IXT5 1001 aaKnown RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 ST13P4Q8IZP2 240 aaPredicted RBP6.91□□□□□ -1.3
USP28-202ENST00000535607 NME8Q8N427 588 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 MIGA1Q8NAN2 632 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 STKLD1Q8NE28 680 aa6.91□□□□□ -1.3
USP28-202ENST00000535607 ZNF384Q8TF68 577 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms