RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ZNF610Q8N9Z0 462 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CCDC112Q8NEF3 446 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 SLC35G2Q8TBE7 412 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 UTP4Q969X6 686 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 CCDC127Q96BQ5 260 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CPB2Q96IY4 423 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 MYRFLQ96LU7 910 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 TEKT5Q96M29 485 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 HEXIM2Q96MH2 286 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 SCLT1Q96NL6 688 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 PANX2Q96RD6 677 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CHP1Q99653 195 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 BAG1Q99933 345 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 ELAC2Q9BQ52 826 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 JPH2Q9BR39 696 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 FDXACB1Q9BRP7 624 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 FAM213AQ9BRX8 229 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 DESI2Q9BSY9 194 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 LRFN3Q9BTN0 628 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 MSTO1Q9BUK6 570 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 DUSP15Q9H1R2 295 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 C2orf40Q9H1Z8 148 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 GANQ9H2C0 597 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 SIX2Q9NPC8 291 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CASS4Q9NQ75 786 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 C1orf112Q9NSG2 853 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CCM2LQ9NUG4 571 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 ABHD10Q9NUJ1 306 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 TRMT1Q9NXH9 659 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 GCNT4Q9P109 453 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 CGNQ9P2M7 1197 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 HDAC6Q9UBN7 1215 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 SRRDQ9UH36 339 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 AJAP1Q9UKB5 411 aaPredicted RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 CAPN11Q9UMQ6 739 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 FAM50BQ9Y247 325 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 INVSQ9Y283 1065 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 PTPN22Q9Y2R2 807 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 NOC2LQ9Y3T9 749 aaKnown RBP4.45□□□□□ -1.7
CD44-226ENST00000527889 CAPN6Q9Y6Q1 641 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 PLXNA4Q9HCM2 1894 aa4.45□□□□□ -1.7
CD44-226ENST00000527889 FASNP49327 2511 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 CFAP54Q96N23 3096 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 A0A0U1RQJ8 604 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FAM95CA0A1B0GW59 222 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 SLC12A8A0AV02 714 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 RRN3P2A6NIE6 340 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 LRRC53A6NM62 1247 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 LRRIQ3A6PVS8 624 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 HAS3O00219 553 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ABLIM1O14639 778 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 MAPK13O15264 365 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PMM2O15305 246 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FGF10O15520 208 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 ASAP2O43150 1006 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ARHGAP6O43182 974 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 SEPT4O43236 478 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 EXTL3O43909 919 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 STX10O60499 249 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FKTNO75072 461 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PIGRP01833 764 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 HMGCRP04035 888 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 AMY2AP04746 511 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PLEKP08567 350 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 IQCF3P0C7M6 154 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FAM87AP0C7U9 286 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 DLATP10515 647 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 RARBP10826 455 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CYP2C9P11712 490 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 AMY2BP19961 511 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FGFR4P22455 802 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 AKAP5P24588 427 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PON1P27169 355 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 TMOD1P28289 359 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 HOXD10P28358 340 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 BCL6P41182 706 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 TNFSF9P41273 254 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ACOT2P49753 483 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 GPC3P51654 580 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 EFNA5P52803 228 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 NAP1L1P55209 391 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 JAM2P57087 298 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 GJA9P57773 515 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PTENP60484 403 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 POLR2FP61218 127 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 OSTNP61366 133 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 SNRPFP62306 86 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 ZBED6P86452 979 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 MBTD1Q05BQ5 628 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CYP24A1Q07973 514 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PPP3CAQ08209 521 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PRPF4BQ13523 1007 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 RAPGEF1Q13905 1077 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 TFDP1Q14186 410 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 MAPK6Q16659 721 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ZNF568Q3ZCX4 644 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 EPC2Q52LR7 807 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 HSP90B2PQ58FF3 399 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FIGNQ5HY92 759 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 NFRKBQ6P4R8 1299 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms