RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 C12orf42Q96LP6 360 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 FDXACB1Q9BRP7 624 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 ZNF358Q9NW07 568 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 WDR81Q562E7 1941 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 LYNP07948 512 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 NCF2P19878 526 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 GTF2A2P52657 109 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 NET1Q7Z628 596 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 CLEC4CQ8WTT0 213 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 CLMNQ96JQ2 1002 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 ZNF778Q96MU6 729 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 SPATA33Q96N06 139 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 GPR20Q99678 358 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 SH3GL3Q99963 347 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 NRDE2Q9H7Z3 1164 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 THAP1Q9NVV9 213 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 MAGED2Q9UNF1 606 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 ASB3Q9Y575 518 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 PROCP04070 461 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 CRHR1P34998 444 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 ZNF280AP59817 542 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 DNAL1Q4LDG9 190 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 CFAP157Q5JU67 520 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 GJC2Q5T442 439 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 RASIP1Q5U651 963 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 AGR3Q8TD06 166 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 FAM167AQ96KS9 214 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 TUBGCP5Q96RT8 1024 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 BARX2Q9UMQ3 279 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 GINS2Q9Y248 185 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 PPME1Q9Y570 386 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 PSAT1Q9Y617 370 aa9.56□□□□□ -0.88
LIMCH1-215ENST00000512632 BCLAF3A2AJT9 711 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 F8W8V4 182 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 HCRTO43612 131 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SERPINA6P08185 405 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PFKMP08237 780 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PHKA2P46019 1235 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 HDAC4P56524 1084 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 HIC1Q14526 733 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PDK2Q15119 407 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 AMHR2Q16671 573 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 TEDDM1Q5T9Z0 273 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 LPCAT4Q643R3 524 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ISLR2Q6UXK2 745 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ATG14Q6ZNE5 492 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 CHST13Q8NET6 341 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PIWIL2Q8TC59 973 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 FGD4Q96M96 766 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 NT5C1AQ9BXI3 368 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 RNPEPQ9H4A4 650 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 GBA2Q9HCG7 927 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SOX13Q9UN79 622 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 APOBEC2Q9Y235 224 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SYNJ2BP-COX16A0A087WUM0 186 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 A0A088AWK7 358 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SDR42E2A6NKP2 422 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 FAM159BA6NKW6 160 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SNNO75324 88 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 IL18RAPO95256 599 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 IL1BP01584 269 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 CCNFP41002 786 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ABCG1P45844 678 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 MBTD1Q05BQ5 628 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 CDC16Q13042 620 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 MYLK4Q86YV6 388 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PYROXD2Q8N2H3 581 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 KHSRPQ92945 711 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 LGMNQ99538 433 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ECSITQ9BQ95 431 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ACSS2Q9NR19 701 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 COX16Q9P0S2 106 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 G3BP2Q9UN86 482 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 TNFSF13BQ9Y275 285 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SNX9Q9Y5X1 595 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 TPP1O14773 563 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 CALRP27797 417 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 SLC1A6P48664 564 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 ASPHQ12797 758 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 BIRC2Q13490 618 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 AP1ARQ63HQ0 302 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 RAPH1Q70E73 1250 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 RASSF3Q86WH2 238 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 TTC30AQ86WT1 665 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 FBXO16Q8IX29 292 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 KLRG1Q96E93 195 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 FRMD8Q9BZ67 464 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 CXCL16Q9H2A7 254 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 MAN1C1Q9NR34 630 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 PAPSS1O43252 624 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 GABBR2O75899 941 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 GSRP00390 522 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 VTNP04004 478 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 P4HA1P13674 534 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 TGM2P21980 687 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 MLH1P40692 756 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 DSG1Q02413 1049 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 FAM91A1Q658Y4 838 aa9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 HEATR6Q6AI08 1181 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-215ENST00000512632 LCLAT1Q6UWP7 414 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms