RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEM225BP0DP42 221 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 NCLP19338 710 aaKnown RBP3.91□□□□□ -1.78
SMC4-220ENST00000488017 SOX2P48431 317 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 COMPP49747 757 aaPredicted RBP3.91□□□□□ -1.78
SMC4-220ENST00000488017 AGFG1P52594 562 aaKnown RBP3.91□□□□□ -1.78
SMC4-220ENST00000488017 ART1P52961 327 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 IZUMO4Q1ZYL8 232 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 MICU3Q86XE3 530 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 DIS3LQ8TF46 1054 aaKnown RBP3.91□□□□□ -1.78
SMC4-220ENST00000488017 KAT2BQ92831 832 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 ZDHHC12Q96GR4 267 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 HES6Q96HZ4 224 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 HIST1H2AAQ96QV6 131 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 SENP7Q9BQF6 1050 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 HTATIP2Q9BUP3 242 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 TTLL2Q9BWV7 592 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 TASP1Q9H6P5 420 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 ZMAT3Q9HA38 289 aaKnown RBP3.91□□□□□ -1.78
SMC4-220ENST00000488017 GABBR1Q9UBS5 961 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 SLC27A6Q9Y2P4 619 aa3.91□□□□□ -1.78
SMC4-220ENST00000488017 CLEC18AA5D8T8 446 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 FAM227AF5H4B4 570 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 PYCARD-AS1I3L0S3 204 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 SOCS5O75159 536 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 RASSF9O75901 435 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 IFNA2P01563 188 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 COPAP53621 1224 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 ITGA8P53708 1063 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 ROR2Q01974 943 aaKnown RBP3.9□□□□□ -1.79
SMC4-220ENST00000488017 DDR1Q08345 913 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 STK3Q13188 491 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 SHBQ15464 509 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 ANO6Q4KMQ2 910 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 C6orf10Q5SRN2 563 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 ISM2Q6H9L7 571 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 CLEC9AQ6UXN8 241 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 CLEC18CQ8NCF0 446 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 TMEM174Q8WUU8 243 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 CENPIQ92674 756 aaPredicted RBP3.9□□□□□ -1.79
SMC4-220ENST00000488017 NT5C1BQ96P26 610 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 SLC12A5Q9H2X9 1139 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 CDCP1Q9H5V8 836 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 IPO11Q9UI26 975 aaKnown RBP3.9□□□□□ -1.79
SMC4-220ENST00000488017 KCNG2Q9UJ96 466 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 SPATA31A5Q5VU36 1347 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 SPATA31A7Q8IWB4 1347 aa3.9□□□□□ -1.79
SMC4-220ENST00000488017 COL15A1P39059 1388 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 TRIM43BA6NCK2 446 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 A6NNC1 897 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 TTC34A8MYJ7 566 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 MARCH6O60337 910 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 UBXN7O94888 489 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 CHRNB1P11230 501 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 TCEA1P23193 301 aaKnown RBP3.89□□□□□ -1.79
SMC4-220ENST00000488017 DUSP1P28562 367 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 RBL1P28749 1068 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 HOXD12P35452 270 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 CPT1AP50416 773 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 ERVFC1-1P60608 527 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 RAE1P78406 368 aaKnown RBP3.89□□□□□ -1.79
SMC4-220ENST00000488017 SLC29A2Q14542 456 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 HIST2H2BCQ6DN03 193 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 MZT2AQ6P582 158 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 B3GNT9Q6UX72 402 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 P3H2Q8IVL5 708 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 CELF1Q92879 486 aaKnown RBP3.89□□□□□ -1.79
SMC4-220ENST00000488017 TRIM43Q96BQ3 446 aaPredicted RBP3.89□□□□□ -1.79
SMC4-220ENST00000488017 CHMP4CQ96CF2 233 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 CDT1Q9H211 546 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 SAP30LQ9HAJ7 183 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 NCKIPSDQ9NZQ3 722 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 DNAJB11Q9UBS4 358 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 VPS51Q9UID3 782 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 ANKRD6Q9Y2G4 727 aa3.89□□□□□ -1.79
SMC4-220ENST00000488017 TRIP12Q14669 1992 aaPredicted RBP3.89□□□□□ -1.79
SMC4-220ENST00000488017 BTBD18B2RXH4 712 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 UMODP07911 640 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 ACVR2AP27037 513 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 NTSR1P30989 418 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 VPS41P49754 854 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 CRYZQ08257 329 aaKnown RBP3.88□□□□□ -1.79
SMC4-220ENST00000488017 IFIT1BQ5T764 474 aaKnown RBP3.88□□□□□ -1.79
SMC4-220ENST00000488017 RNF187Q5TA31 235 aaPredicted RBP3.88□□□□□ -1.79
SMC4-220ENST00000488017 GRHL2Q6ISB3 625 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 ZBTB46Q86UZ6 589 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 IL31RAQ8NI17 732 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 INPP5DQ92835 1189 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 WBP2Q969T9 261 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 PRR11Q96HE9 360 aaPredicted RBP3.88□□□□□ -1.79
SMC4-220ENST00000488017 ERVK-5Q9HDB9 667 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 ABHD10Q9NUJ1 306 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 ASNSD1Q9NWL6 643 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 DKK4Q9UBT3 224 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 INSL5Q9Y5Q6 135 aa3.88□□□□□ -1.79
SMC4-220ENST00000488017 PRYO14603 147 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 TBX3O15119 743 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 MDM4O15151 490 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 DDNO94850 711 aaPredicted RBP3.87□□□□□ -1.79
SMC4-220ENST00000488017 INMTO95050 263 aa3.87□□□□□ -1.79
SMC4-220ENST00000488017 SGPL1O95470 568 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms