RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ATG13O75143 517 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TADA3O75528 432 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 MOCS2O96007 188 aaPredicted RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 CALCAP01258 141 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 DCNP07585 359 aaKnown RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 SLC2A3P11169 496 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 FCARP24071 287 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 VARSP26640 1264 aaKnown RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 AVPR2P30518 371 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 CORO1AP31146 461 aaKnown RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 RPIAP49247 311 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TBX4P57082 545 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 APBA1Q02410 837 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TNK2Q07912 1038 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 KLHL30Q0D2K2 578 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 USP4Q13107 963 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 PDCLQ13371 301 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TRIM14Q14142 442 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 ZNF77Q15935 545 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 MEA1Q16626 185 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 DCAF6Q58WW2 860 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 DGKKQ5KSL6 1271 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 FAM102AQ5T9C2 384 aaPredicted RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 NAA35Q5VZE5 725 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 NUGGCQ68CJ6 796 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 PMF1Q6P1K2 205 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 DENND1BQ6P3S1 775 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 ZC3H14Q6PJT7 736 aaKnown RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 TMEM150AQ86TG1 271 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 ZDHHC17Q8IUH5 632 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 FAM71AQ8IYT1 594 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 PJA1Q8NG27 643 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 UCMAQ8WVF2 138 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TFAP2BQ92481 460 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 ATOH1Q92858 354 aaPredicted RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 CD101Q93033 1021 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 C18orf8Q96DM3 657 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 ERGIC2Q96RQ1 377 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 SLC22A12Q96S37 553 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 P2RY13Q9BPV8 354 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 HINFPQ9BQA5 517 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 BBS2Q9BXC9 721 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 FOXQ1Q9C009 403 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TRIM5Q9C035 493 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 LMAN1LQ9HAT1 526 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 POPDC2Q9HBU9 364 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 LTB4R2Q9NPC1 389 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 TRPV5Q9NQA5 729 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP40-216ENST00000485943 IFNKQ9P0W0 207 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 WDR35Q9P2L0 1181 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 DEC1Q9P2X7 70 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 SLC8A2Q9UPR5 921 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 KIF26AQ9ULI4 1882 aaPredicted RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 KRBA1A5PL33 1030 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 TBC1D3BA6NDS4 549 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 TULP2O00295 520 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 HSF2BPO75031 334 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 GRAP2O75791 330 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 LSM8O95777 96 aaKnown RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 PDGFBP01127 241 aaPredicted RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 CALB1P05937 261 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 MMEP08473 750 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 PNMA6AP0CW24 399 aaPredicted RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 ARSAP15289 507 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 AOC1P19801 751 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 DRD1P21728 446 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 SOX9P48436 509 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 KLK7P49862 253 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 ZNF132P52740 706 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 STARD6P59095 220 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 DAOAP59103 153 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 ZNF445P59923 1031 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 KDSRQ06136 332 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 KCNMA1Q12791 1236 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 NME3Q13232 169 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 MTA1Q13330 715 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 FBXO43Q4G163 708 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 OXLD1Q5BKU9 147 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 RAB41Q5JT25 222 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 SNX30Q5VWJ9 437 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 GRAMD4Q6IC98 578 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 DCUN1D2Q6PH85 259 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 KLHDC10Q6PID8 442 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 ANKMY2Q8IV38 441 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 DENND1CQ8IV53 801 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 UBR7Q8N806 425 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 NAT16Q8N8M0 369 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 ATP6V0D2Q8N8Y2 350 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 ZNF557Q8N988 423 aaPredicted RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 SLC35F5Q8WV83 523 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 NDRG1Q92597 394 aaKnown RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 ACDQ96AP0 544 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 KCTD15Q96SI1 283 aaPredicted RBP8.38□□□□□ -1.07
USP40-216ENST00000485943 IER2Q9BTL4 223 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 RNF38Q9H0F5 515 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 LHX5Q9H2C1 402 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 NMUR1Q9HB89 426 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 TMEM30AQ9NV96 361 aa8.38□□□□□ -1.07
USP40-216ENST00000485943 SFMBT1Q9UHJ3 866 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms