RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 HS6ST2Q96MM7 605 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 SNX18Q96RF0 628 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 RTKNQ9BST9 563 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 FBXO28Q9NVF7 368 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 VPS4AQ9UN37 437 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 TNFRSF18Q9Y5U5 241 aa5.69□□□□□ -1.5
PTCD3-211ENST00000476215 PLEKHD1A6NEE1 506 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 SMIM22K7EJ46 135 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 PIP5K1CO60331 668 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 PRAMEF2O60811 474 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 RPP40O75818 363 aaKnown RBP5.68□□□□□ -1.5
PTCD3-211ENST00000476215 APEHP13798 732 aaKnown RBP5.68□□□□□ -1.5
PTCD3-211ENST00000476215 MMP8P22894 467 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 CFHR3Q02985 330 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 TIGD6Q17RP2 521 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 MAFAQ8NHW3 353 aaPredicted RBP5.68□□□□□ -1.5
PTCD3-211ENST00000476215 STT3BQ8TCJ2 826 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 SLC22A17Q8WUG5 538 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 TRAPPC12Q8WVT3 735 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 EDC3Q96F86 508 aaKnown RBP5.68□□□□□ -1.5
PTCD3-211ENST00000476215 ADARB2Q9NS39 739 aaKnown RBP5.68□□□□□ -1.5
PTCD3-211ENST00000476215 SERGEFQ9UGK8 458 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 PCDHB7Q9Y5E2 793 aa5.68□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC187A0A096LP49 1063 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 LRRC3CA6NJW4 275 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 H7C1Q1 480 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 GCATO75600 419 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 MT-CO3P00414 261 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 VEGFAP15692 232 aaPredicted RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 GALNSP34059 522 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 IGHMBP2P38935 993 aaKnown RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 AP2B1P63010 937 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 RAE1P78406 368 aaKnown RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 PRKG1Q13976 671 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 ZRSR2Q15696 482 aaKnown RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 INO80DQ53TQ3 878 aaPredicted RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 SUMO4Q6EEV6 95 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 JMJD6Q6NYC1 403 aaPredicted RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 TRABD2AQ86V40 505 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 LINC01465Q8N7H1 131 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 RUBCNQ92622 972 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 RSC1A1Q92681 617 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 TRIM63Q969Q1 353 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 MCRS1Q96EZ8 462 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC17Q96LX7 622 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 TMEM120AQ9BXJ8 343 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 BRD8Q9H0E9 1235 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 PABPC3Q9H361 631 aaKnown RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 MLXIPQ9HAP2 919 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 RXFP3Q9NSD7 469 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 ASIC5Q9NY37 505 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 FRMD4BQ9Y2L6 1034 aa5.67□□□□□ -1.5
PTCD3-211ENST00000476215 UBE2J1Q9Y385 318 aaPredicted RBP5.67□□□□□ -1.5
PTCD3-211ENST00000476215 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-211ENST00000476215 WIPF3A6NGB9 483 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 HMX3A6NHT5 357 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 KIF28PB7ZC32 967 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 INO80B-WBP1J3KQ70 363 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 M0QZQ0 153 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 CLIC1O00299 241 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 IPO5O00410 1097 aaKnown RBP5.66□□□□□ -1.5
PTCD3-211ENST00000476215 FYB1O15117 783 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 PPP6R2O75170 966 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 JAK3P52333 1124 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 PNLIPRP1P54315 467 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 PROK1P58294 105 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 FOXF2Q12947 444 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 MFSD13AQ14CX5 517 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 POSTNQ15063 836 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 TANGO2Q6ICL3 276 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 TMEM65Q6PI78 240 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 DCDC5Q6ZRR9 648 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 SLC44A2Q8IWA5 706 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-211ENST00000476215 GALNT15Q8N3T1 639 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 SCAMP5Q8TAC9 235 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 OTUD7AQ8TE49 926 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-211ENST00000476215 FYTTD1Q96QD9 318 aaKnown RBP5.66□□□□□ -1.5
PTCD3-211ENST00000476215 PAAF1Q9BRP4 392 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 ADGRE3Q9BY15 652 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 CCDC134Q9H6E4 229 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 PRDM8Q9NQV8 689 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 FZD4Q9ULV1 537 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 NFU1Q9UMS0 254 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 DAPP1Q9UN19 280 aa5.66□□□□□ -1.5
PTCD3-211ENST00000476215 TCRBV5S1A1TA0A578 114 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 GXYLT2A0PJZ3 443 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 MBPP02686 304 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-211ENST00000476215 THBS4P35443 961 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 CBFBQ13951 182 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 KCNB1Q14721 858 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 FAM187BQ17R55 369 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 TMEM119Q4V9L6 283 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 ZNF569Q5MCW4 686 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 TMEM63BQ5T3F8 832 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 ANKRD40Q6AI12 368 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 FCRLBQ6BAA4 426 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 ACSM6Q6P461 480 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 NFRKBQ6P4R8 1299 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 C16orf89Q6UX73 402 aa5.65□□□□□ -1.5
PTCD3-211ENST00000476215 RAB11FIP2Q7L804 512 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms