RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PIK3CD-AS1Q5SR53 167 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 CLEC9AQ6UXN8 241 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 TRILQ7L0X0 811 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 FAM71DQ8N9W8 422 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 LMO3Q8TAP4 145 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 INPP5DQ92835 1189 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 ATP2A3Q93084 1043 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 NMD3Q96D46 503 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 B3GNT5Q9BYG0 378 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 KIR2DS5A0A0G2JLQ3 304 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 KIR2DS3K7RE56 304 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 ACOT8O14734 319 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 CHRNB1P11230 501 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 ACVR2AP27037 513 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 CPT1AP50416 773 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 SUMO3P55854 103 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 AASDHQ4L235 1098 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 C3orf38Q5JPI3 329 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 MANEALQ5VSG8 457 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 APOA5Q6Q788 366 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 ZBTB34Q8NCN2 500 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 SLC35G2Q8TBE7 412 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 STAG1Q8WVM7 1258 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 JPH3Q8WXH2 748 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 ZDHHC12Q96GR4 267 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 HIST1H2AAQ96QV6 131 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 STK31Q9BXU1 1019 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 RBM38Q9H0Z9 239 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 ABHD10Q9NUJ1 306 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 DDX56Q9NY93 547 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 COL20A1Q9P218 1284 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 MID2Q9UJV3 735 aa3.95□□□□□ -1.78
CCDC88A-212ENST00000474059 H0YGN5 161 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 RAB27BO00194 218 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 GRID2O43424 1007 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 CBFA2T3O75081 653 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 TXNP10599 105 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 TFEBP19484 476 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 RBL1P28749 1068 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 CDC25AP30304 524 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 ZNF84P51523 738 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 SLC4A8Q2Y0W8 1093 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 MAEAQ7L5Y9 396 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 ARL14EPQ8N8R7 260 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 GJA10Q969M2 543 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 AIFM3Q96NN9 605 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 NTPCRQ9BSD7 190 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 RTFDC1Q9BY42 306 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 CHST8Q9H2A9 424 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 DNAJB11Q9UBS4 358 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 PAXBP1Q9Y5B6 917 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 INSL5Q9Y5Q6 135 aa3.94□□□□□ -1.78
CCDC88A-212ENST00000474059 RASSF9O75901 435 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 ACAA1P09110 424 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 RPS16P62249 146 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 ACOX1Q15067 660 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 PLAG1Q6DJT9 500 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 RTL10Q7L3V2 364 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 EPM2AIP1Q7L775 607 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 KIAA0319LQ8IZA0 1049 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 NGDNQ8NEJ9 315 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 CELF1Q92879 486 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 ZNF668Q96K58 619 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 ZNF556Q9HAH1 456 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 FZD3Q9NPG1 666 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 HOMER2Q9NSB8 354 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 SACM1LQ9NTJ5 587 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 ERRFI1Q9UJM3 462 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 CAPN11Q9UMQ6 739 aa3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 HEMK1Q9Y5R4 338 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-212ENST00000474059 A0A1B0GUV1 79 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 DDNO94850 711 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 WDR47O94967 919 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 PPP1R3DO95685 299 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 PDGFRBP09619 1106 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 TMEM225BP0DP42 221 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 BTF3P20290 206 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 NDUFS1P28331 727 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 HOXD12P35452 270 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 DSCR9P59020 149 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 RPL36AP83881 106 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 EGR4Q05215 589 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 NADSYN1Q6IA69 706 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 TPH2Q8IWU9 490 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 ELP5Q8TE02 316 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 URB1-AS1Q96HZ7 61 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 VPS50Q96JG6 964 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 CINPQ9BW66 212 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 FAM83DQ9H4H8 585 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 NMRK2Q9NPI5 230 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 TYW1Q9NV66 732 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 ASNSD1Q9NWL6 643 aa3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 PNMA8BQ9ULN7 279 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-212ENST00000474059 PAPSS2O95340 614 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 MLH1P40692 756 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 RFX2P48378 723 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 VPS41P49754 854 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 RRP1P56182 461 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 SLC29A2Q14542 456 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 PLEKHG6Q3KR16 790 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms