RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GABBR2O75899 941 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 SETSIPP0DME0 302 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 VDRP11473 427 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 CHKAP35790 457 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 BYSLQ13895 437 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 MORC3Q14149 939 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 GEN1Q17RS7 908 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 CCDC40Q4G0X9 1142 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 PEAR1Q5VY43 1037 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 KLHL10Q6JEL2 608 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 FOXR2Q6PJQ5 311 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 TMEM270Q6UE05 265 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 CPXM2Q8N436 756 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 KCTD13Q8WZ19 329 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 PLD4Q96BZ4 506 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 LRRC4Q9HBW1 653 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 EVLQ9UI08 416 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 KIAA1257Q9ULG3 409 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 CLEC4EQ9ULY5 219 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 ATXN2Q99700 1313 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 IGF2RP11717 2491 aa19.67■□□□□ 0.74
CCDC88B-206ENST00000473405 IGHV1OR15-9A0A0B4J2B8 117 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 WASH3PC4AMC7 463 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 RNF225M0QZC1 329 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 GFRA2O00451 464 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 CDX4O14627 284 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 GADD45BO75293 160 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 KCNK5O95279 499 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 PAEPP09466 180 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 PPP1R2P41236 205 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 IRX4P78413 519 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 TRIP4Q15650 581 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 N4BP2L1Q5TBK1 243 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 LYSMD4Q5XG99 296 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 LCLAT1Q6UWP7 414 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 SYT12Q8IV01 421 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 FMNL3Q8IVF7 1028 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 NELFBQ8WX92 580 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 EDEM1Q92611 657 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 PIWIL1Q96J94 861 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 NT5C1BQ96P26 610 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 IPO9Q96P70 1041 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 SLC6A17Q9H1V8 727 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 CD93Q9NPY3 652 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 OLA1Q9NTK5 396 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 CTNND2Q9UQB3 1225 aa19.66■□□□□ 0.74
CCDC88B-206ENST00000473405 ITPKAP23677 461 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 DAOAP59103 153 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 RPL6Q02878 288 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 TRIM61Q5EBN2 209 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 BSPRYQ5W0U4 402 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 SDE2Q6IQ49 451 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 SIX6OS1Q8N1H7 587 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 SCML4Q8N228 414 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 PPM1KQ8N3J5 372 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 RBBP8NLQ8NC74 664 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 MRGPRX1Q96LB2 322 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 TMEM9BQ9NQ34 198 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 PILRBQ9UKJ0 227 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 STON1Q9Y6Q2 735 aa19.65■□□□□ 0.74
CCDC88B-206ENST00000473405 BIN1O00499 593 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 AP5Z1O43299 807 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 MSI1O43347 362 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 CALCAP01258 141 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 PMLP29590 882 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 ZNF132P52740 706 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 ENPP2Q13822 863 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 PSAPL1Q6NUJ1 521 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 PMF1Q6P1K2 205 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 ANKS1BQ7Z6G8 1248 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 ARHGEF19Q8IW93 802 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 TRIM59Q8IWR1 403 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 SLC35F5Q8WV83 523 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 CNGB3Q9NQW8 809 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 THAP10Q9P2Z0 257 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 SFMBT1Q9UHJ3 866 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 CYP8B1Q9UNU6 501 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 HBS1LQ9Y450 684 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 PCDHB4Q9Y5E5 795 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 FREM2Q5SZK8 3169 aa19.64■□□□□ 0.73
CCDC88B-206ENST00000473405 P4HA2O15460 535 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 LCP1P13796 627 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 BRD2P25440 801 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 HOXD9P28356 352 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 HOXD12P35452 270 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 IL12RB1P42701 662 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 RGS7P49802 495 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 FUT11Q495W5 492 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 TMEM215Q68D42 235 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 SLC36A4Q6YBV0 504 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 RRAGAQ7L523 313 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 DEFB119Q8N690 84 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 DDI1Q8WTU0 396 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 ABCC13Q9NSE7 274 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 STOML2Q9UJZ1 356 aa19.63■□□□□ 0.73
CCDC88B-206ENST00000473405 BICDL2A1A5D9 508 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 M0QYV0 167 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 PIK3R2O00459 728 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 NPC1O15118 1278 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms