RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LIASO43766 372 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 LPXNO60711 386 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ZDHHC11BP0C7U3 371 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ATF6P18850 670 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 CCR1P32246 355 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 PTGIRP43119 386 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 HCAR3P49019 387 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 NR2C2P49116 596 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 VCPP55072 806 aaKnown RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 VSNL1P62760 191 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 PITX1P78337 314 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 SLC7A5Q01650 507 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 GUCY2DQ02846 1103 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TAF10Q12962 218 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 EIF4EBP2Q13542 120 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 BYSLQ13895 437 aaKnown RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TAF12Q16514 161 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 RAB6CQ53S08 254 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ZC3H12AQ5D1E8 599 aaKnown RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 PPP6R3Q5H9R7 873 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 SDHAF4Q5VUM1 108 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 SNX30Q5VWJ9 437 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 SLC9A4Q6AI14 798 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 PDE12Q6L8Q7 609 aaKnown RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 FBXO38Q6PIJ6 1188 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TMCO3Q6UWJ1 677 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 CCDC149Q6ZUS6 474 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TMC7Q7Z402 723 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ITIH5Q86UX2 942 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 JAMLQ86YT9 394 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 STKLD1Q8NE28 680 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 C1orf54Q8WWF1 131 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 NKD2Q969F2 451 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-205ENST00000473099 MYRFLQ96LU7 910 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ERP44Q9BS26 406 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 RAB6CQ9H0N0 254 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 EPC1Q9H2F5 836 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 EPB41L5Q9HCM4 733 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 GMIPQ9P107 970 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TLR6Q9Y2C9 796 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 YIPF1Q9Y548 306 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 ASB3Q9Y575 518 aa13.31□□□□□ -0.28
VPS13D-205ENST00000473099 TRIOBPQ9H2D6 2365 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 SYNJ2BP-COX16A0A087WUM0 186 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 LINC01553A4QN01 128 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 TEX28O15482 410 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CXCL14O95715 111 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ITGAVP06756 1048 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CD48P09326 243 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 RARGP13631 454 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 DNAJB2P25686 324 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ATXN1P54253 815 aaKnown RBP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 EPHB3P54753 998 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 USP46P62068 366 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 OTUD4Q01804 1114 aaKnown RBP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 LLGL1Q15334 1064 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 PPP1R7Q15435 360 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 TTC27Q6P3X3 843 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CCNI2Q6ZMN8 369 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 PDZD4Q76G19 769 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ANKS1BQ7Z6G8 1248 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 SLC35B2Q8TB61 432 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 P3H4Q92791 437 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 RNF34Q969K3 372 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 HAUS1Q96CS2 278 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CCDC114Q96M63 670 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 HAPLN3Q96S86 360 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 KCTD15Q96SI1 283 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 EPAS1Q99814 870 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 OSBPL2Q9H1P3 480 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 NMUR1Q9HB89 426 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ENTPD7Q9NQZ7 604 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS13D-205ENST00000473099 GPATCH2LQ9NWQ4 482 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 MTMR10Q9NXD2 777 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ARHGEF38Q9NXL2 777 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 COX16Q9P0S2 106 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CALCOCO1Q9P1Z2 691 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 SLC12A6Q9UHW9 1150 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 CHD5Q8TDI0 1954 aa13.3□□□□□ -0.28
VPS13D-205ENST00000473099 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CFAP69A5D8W1 941 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 SOAT2O75908 522 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 SEC24AO95486 1093 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 IL4RP24394 825 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 TUBP50607 506 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CLCN6P51797 869 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 DYNLT1P63172 113 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 NRG1Q02297 640 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 RING1Q06587 406 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 MMRN1Q13201 1228 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 SEMA3BQ13214 749 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 SNX1Q13596 522 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 PTK6Q13882 451 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 NOMO1Q15155 1222 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 TRIP4Q15650 581 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CA9Q16790 459 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 DUPD1Q68J44 220 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 EMBQ6PCB8 327 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 KLHDC10Q6PID8 442 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms