RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 IPO9Q96P70 1041 aaKnown RBP20.69■□□□□ 0.9
COL9A3-210ENST00000472880 SLC6A17Q9H1V8 727 aa20.69■□□□□ 0.9
COL9A3-210ENST00000472880 OLA1Q9NTK5 396 aaKnown RBP20.69■□□□□ 0.9
COL9A3-210ENST00000472880 SLC6A14Q9UN76 642 aa20.69■□□□□ 0.9
COL9A3-210ENST00000472880 STON1Q9Y6Q2 735 aa20.69■□□□□ 0.9
COL9A3-210ENST00000472880 CEP192Q8TEP8 1941 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 TRIM49BA6NDI0 452 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 WASH3PC4AMC7 463 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 NPC1O15118 1278 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 NDUFS2O75306 463 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 TBXAS1P24557 533 aaPredicted RBP20.68■□□□□ 0.9
COL9A3-210ENST00000472880 GFPT1Q06210 699 aaPredicted RBP20.68■□□□□ 0.9
COL9A3-210ENST00000472880 ADIGQ0VDE8 80 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 STIM1Q13586 685 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 GEN1Q17RS7 908 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 PM20D1Q6GTS8 502 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 SIX6OS1Q8N1H7 587 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 DEFB124Q8NES8 71 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 ERCC4Q92889 916 aaPredicted RBP20.68■□□□□ 0.9
COL9A3-210ENST00000472880 SLC35C1Q96A29 364 aa20.68■□□□□ 0.9
COL9A3-210ENST00000472880 GTPBP2Q9BX10 602 aaKnown RBP20.68■□□□□ 0.9
COL9A3-210ENST00000472880 KMT2BQ9UMN6 2715 aaPredicted RBP20.67■□□□□ 0.9
COL9A3-210ENST00000472880 TULP2O00295 520 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 SERPINF2P08697 491 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 LRMPQ12912 555 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 FOXC1Q12948 553 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 E2F5Q15329 346 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 SLC41A1Q8IVJ1 513 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 TRIML1Q8N9V2 468 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 DDI1Q8WTU0 396 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 RNF139Q8WU17 664 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 SLC32A1Q9H598 525 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 CD93Q9NPY3 652 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 FSCN3Q9NQT6 498 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 THAP10Q9P2Z0 257 aaPredicted RBP20.67■□□□□ 0.9
COL9A3-210ENST00000472880 CHD8Q9HCK8 2581 aa20.67■□□□□ 0.9
COL9A3-210ENST00000472880 MAP1BP46821 2468 aaKnown RBP20.66■□□□□ 0.9
COL9A3-210ENST00000472880 PSMA7O14818 248 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 SETSIPP0DME0 302 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 VDRP11473 427 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 IL12RB1P42701 662 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 HARS2P49590 506 aaKnown RBP20.66■□□□□ 0.9
COL9A3-210ENST00000472880 ZNF132P52740 706 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 EIF4HQ15056 248 aaKnown RBP20.66■□□□□ 0.9
COL9A3-210ENST00000472880 FUT11Q495W5 492 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 BHLHA9Q7RTU4 235 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 FMNL3Q8IVF7 1028 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 RGL4Q8IZJ4 473 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 HDDC3Q8N4P3 179 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 ENGASEQ8NFI3 743 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 SPATA20Q8TB22 786 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 NDRG1Q92597 394 aaKnown RBP20.66■□□□□ 0.9
COL9A3-210ENST00000472880 CIPCQ9C0C6 399 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 PRDM16Q9HAZ2 1276 aa20.66■□□□□ 0.9
COL9A3-210ENST00000472880 METTL14Q9HCE5 456 aaKnown RBP20.66■□□□□ 0.9
COL9A3-210ENST00000472880 O00370 1275 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 SYNCRIPO60506 623 aaKnown RBP20.65■□□□□ 0.9
COL9A3-210ENST00000472880 FMO5P49326 533 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 ARID5AQ03989 594 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 TRIP4Q15650 581 aaPredicted RBP20.65■□□□□ 0.9
COL9A3-210ENST00000472880 MPPE1Q53F39 396 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 SYCP2LQ5T4T6 812 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 FAM217AQ8IXS0 508 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 UBA3Q8TBC4 463 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 FOXJ1Q92949 421 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 PIWIL1Q96J94 861 aaKnown RBP20.65■□□□□ 0.9
COL9A3-210ENST00000472880 TIGD1Q96MW7 591 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 SLC2A11Q9BYW1 496 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 CAPN10Q9HC96 672 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 KIAA1257Q9ULG3 409 aa20.65■□□□□ 0.9
COL9A3-210ENST00000472880 HBS1LQ9Y450 684 aaKnown RBP20.65■□□□□ 0.9
COL9A3-210ENST00000472880 CD6P30203 668 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 PPP1R2P41236 205 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 NUCB2P80303 420 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 ENPP2Q13822 863 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 ZNF234Q14588 700 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 CCDC40Q4G0X9 1142 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 BSPRYQ5W0U4 402 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 TMEM270Q6UE05 265 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 UBR7Q8N806 425 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 KCTD13Q8WZ19 329 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 EDEM1Q92611 657 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 CEP63Q96MT8 703 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 NT5C1BQ96P26 610 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 CNGB3Q9NQW8 809 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 ABCC13Q9NSE7 274 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 ELOVL2Q9NXB9 296 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 SUSD2Q9UGT4 822 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 SFMBT1Q9UHJ3 866 aa20.64■□□□□ 0.89
COL9A3-210ENST00000472880 PCDH15Q96QU1 1955 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 YJEFN3A6XGL0 299 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 E7ENQ6 273 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 OPHN1O60890 802 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 SYPP08247 313 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 PAEPP09466 180 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 LCP1P13796 627 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 ZNF445P59923 1031 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 WDR45BQ5MNZ6 344 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 SERPINA13PQ6UXR4 307 aa20.63■□□□□ 0.89
COL9A3-210ENST00000472880 METTL3Q86U44 580 aaKnown RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms