RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RNF139Q8WU17 664 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 RLN3Q8WXF3 142 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 EDEM1Q92611 657 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 P2RY11Q96G91 374 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 INTS2Q9H0H0 1204 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 OLA1Q9NTK5 396 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 AGO1Q9UL18 857 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 HCN2Q9UL51 889 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 YJEFN3A6XGL0 299 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 E7ENQ6 273 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 NTSR1P30989 418 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 CHKAP35790 457 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 NOVA1P51513 510 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 BSPRYQ5W0U4 402 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 CYP2U1Q7Z449 544 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 CHPFQ8IZ52 775 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 FRMD1Q8N878 549 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 OLIG1Q8TAK6 271 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 KCNV2Q8TDN2 545 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 KCTD13Q8WZ19 329 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 PLD4Q96BZ4 506 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 SPACA7Q96KW9 195 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 KREMEN1Q96MU8 473 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 ACOX2Q99424 681 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 ZSWIM1Q9BR11 485 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 SFMBT1Q9UHJ3 866 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 STARD13Q9Y3M8 1113 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 FRYQ5TBA9 3013 aa16.44■□□□□ 0.22
CCDC88B-205ENST00000472524 CKAP5Q14008 2032 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 ADAMTS9Q9P2N4 1935 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 KHNYNO15037 678 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 CISD3P0C7P0 127 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 KRT5P13647 590 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 DHPSP49366 369 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 DAOAP59103 153 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 IRX4P78413 519 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 GCNT1Q02742 428 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 STILQ15468 1287 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 CNGA2Q16280 664 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 FYB2Q5VWT5 728 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 SDE2Q6IQ49 451 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 PMF1Q6P1K2 205 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 SLC35F5Q8WV83 523 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 CNGB3Q9NQW8 809 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 RWDD2AQ9UIY3 292 aa16.43■□□□□ 0.22
CCDC88B-205ENST00000472524 CDX4O14627 284 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 MAP3K13O43283 966 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 MSI1O43347 362 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 PENKP01210 267 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 CYBBP04839 570 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 GABRG2P18507 467 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 P2RY2P41231 377 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 ZNF132P52740 706 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 SH3PXD2AQ5TCZ1 1133 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 CLEC4CQ8WTT0 213 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 PIGKQ92643 395 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 CRACR2AQ9BSW2 395 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 UBE2TQ9NPD8 197 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 ABCC13Q9NSE7 274 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 CACNA2D2Q9NY47 1150 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 MBD1Q9UIS9 605 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 HBS1LQ9Y450 684 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 RAD54BQ9Y620 910 aa16.42■□□□□ 0.22
CCDC88B-205ENST00000472524 CEP295Q9C0D2 2601 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 A0A1W2PQF6 199 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 TSPAN3O60637 253 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 GABBR2O75899 941 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 PTGER3P43115 390 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 HARS2P49590 506 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 MFAP3P55082 362 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 TRIP4Q15650 581 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 GEN1Q17RS7 908 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 DAB2IPQ5VWQ8 1189 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 ARMCX6Q7L4S7 300 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 TMEFF1Q8IYR6 380 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 CPXM2Q8N436 756 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 IPO4Q8TEX9 1081 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 DDI1Q8WTU0 396 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 MIS12Q9H081 205 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 TMEM9BQ9NQ34 198 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 CALCOCO1Q9P1Z2 691 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 FBXO10Q9UK96 956 aa16.41■□□□□ 0.22
CCDC88B-205ENST00000472524 ASCC3Q8N3C0 2202 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 ZBTB24O43167 697 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 LTFP02788 710 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 ZNF252P-AS1Q0IIN9 211 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 BYSLQ13895 437 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 TPD52L1Q16890 204 aaPredicted RBP16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 MAP7D1Q3KQU3 841 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 KIAA1211LQ6NV74 962 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 GJB7Q6PEY0 223 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 LPCAT2Q7L5N7 544 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 ANKS1BQ7Z6G8 1248 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 SCML4Q8N228 414 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 IRGQQ8WZA9 623 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 GOLGA1Q92805 767 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 HSFY1Q96LI6 401 aa16.4■□□□□ 0.22
CCDC88B-205ENST00000472524 MED15Q96RN5 788 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms