RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SP7Q8TDD2 431 aaPredicted RBP9.74□□□□□ -0.85
VPS52-216ENST00000471309 P3H4Q92791 437 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 SNF8Q96H20 258 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 CLSTN3Q9BQT9 956 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 TTLL2Q9BWV7 592 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 TRIM31Q9BZY9 425 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 NEUROG2Q9H2A3 272 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 NMUR1Q9HB89 426 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 PCDH9Q9HC56 1237 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 CLIC5Q9NZA1 410 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS52-216ENST00000471309 CWC15Q9P013 229 aaKnown RBP9.74□□□□□ -0.85
VPS52-216ENST00000471309 COX16Q9P0S2 106 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 WHRNQ9P202 907 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 ASIC3Q9UHC3 531 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 FBXW11Q9UKB1 542 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 ZNF148Q9UQR1 794 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 SLC27A5Q9Y2P5 690 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 SNX24Q9Y343 169 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 INSL6Q9Y581 213 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 PCDHB12Q9Y5F1 795 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 DNAH12Q6ZR08 3092 aa9.74□□□□□ -0.85
VPS52-216ENST00000471309 A0A1W2PQH9 124 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 NDC80O14777 642 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 SOAT2O75908 522 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 KRT14P02533 472 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 FAM153BP0C7A2 387 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 LINC00271P0C7V0 271 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 RPL17P18621 184 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 HSPA9P38646 679 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 HCAR3P49019 387 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 NR2C2P49116 596 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 EIF3EP60228 445 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 CAV1Q03135 178 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 CALCOCO2Q13137 446 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 RAB33AQ14088 237 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 DPYSQ14117 519 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 PPP2R5DQ14738 602 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 FAM153CQ494X1 144 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 TMEM240Q5SV17 173 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 GSTA5Q7RTV2 222 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 HERC6Q8IVU3 1022 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 PYROXD2Q8N2H3 581 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 ZNF461Q8TAF7 563 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 PHOSPHO2Q8TCD6 241 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 RNF139Q8WU17 664 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 HERVK_113Q902F9 699 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 CLP1Q92989 425 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 ART4Q93070 314 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 SERPINB11Q96P15 392 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 FMO2Q99518 471 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 ACBD3Q9H3P7 528 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 WDCPQ9H6R7 721 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 ARHGEF4Q9NR80 690 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 TLR8Q9NR97 1041 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.73□□□□□ -0.85
VPS52-216ENST00000471309 OLA1Q9NTK5 396 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 OSER1Q9NX31 292 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 ARHGEF38Q9NXL2 777 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 GMIPQ9P107 970 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 FNIP2Q9P278 1114 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 SAE1Q9UBE0 346 aaPredicted RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 MTRF1LQ9UGC7 380 aaKnown RBP9.73□□□□□ -0.85
VPS52-216ENST00000471309 FAM153AQ9UHL3 310 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 MAFFQ9ULX9 164 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 SSX2IPQ9Y2D8 614 aa9.73□□□□□ -0.85
VPS52-216ENST00000471309 PLXNA4Q9HCM2 1894 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 CFAP69A5D8W1 941 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 SLC38A8A6NNN8 435 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 I6L893 689 aaPredicted RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 SGK1O00141 431 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 EEF2KO00418 725 aaKnown RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 C2CD2LO14523 706 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 FGF18O76093 207 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 ZDHHC11BP0C7U3 371 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 RBP3P10745 1247 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 GOT1P17174 413 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 ITIH2P19823 946 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 IVDP26440 423 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 HTR7P34969 479 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 PGFP49763 221 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TAF10Q12962 218 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 XRCC4Q13426 336 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TRIP13Q15645 432 aaPredicted RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 SPDYCQ5MJ68 293 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 NCBP2-AS2Q69YL0 99 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 NPNTQ6UXI9 565 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 RFX8Q6ZV50 586 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 CDKL3Q8IVW4 592 aaPredicted RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 VPS52Q8N1B4 723 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 STKLD1Q8NE28 680 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 PDZD8Q8NEN9 1154 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 FBXO25Q8TCJ0 367 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 GPR152Q8TDT2 470 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 OVCA2Q8WZ82 227 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 CASP10Q92851 521 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 FBXO32Q969P5 355 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 LRRC45Q96CN5 670 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 GDAP1L1Q96MZ0 367 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 OLFM3Q96PB7 478 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms